# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg05332.fasta.nr -Q ../query/mKIAA0488.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
mKIAA0488, 519 aa
vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library
2727779818 residues in 7921681 sequences
statistics sampled from 60000 to 7913265 sequences
Expectation_n fit: rho(ln(x))= 5.3890+/-0.000187; mu= 11.0901+/- 0.010
mean_var=89.6174+/-17.363, 0's: 27 Z-trim: 61 B-trim: 143 in 1/63
Lambda= 0.135481
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 37, opt: 25, open/ext: -10/-2, width: 16
The best scores are: opt bits E(7921681)
gi|74184617|dbj|BAE27921.1| unnamed protein produc ( 526) 3524 698.9 8.7e-199
gi|149030741|gb|EDL85778.1| sorting nexin family m ( 526) 3511 696.4 5.1e-198
gi|32425866|gb|AAH53495.1| Snx27 protein [Mus musc ( 532) 3510 696.2 5.9e-198
gi|166200308|sp|Q3UHD6.2|SNX27_MOUSE RecName: Full ( 539) 3510 696.2 5.9e-198
gi|22324239|dbj|BAC10333.1| PDZ protein Mrt1b [Rat ( 526) 3506 695.4 1e-197
gi|149030740|gb|EDL85777.1| sorting nexin family m ( 539) 3497 693.6 3.4e-197
gi|166200309|sp|Q8K4V4.2|SNX27_RAT RecName: Full=S ( 539) 3492 692.7 6.8e-197
gi|166200288|sp|A5PKA5.1|SNX27_BOVIN RecName: Full ( 541) 3483 690.9 2.3e-196
gi|22324237|dbj|BAC10332.1| PDZ protein Mrt1a [Rat ( 539) 3481 690.5 3e-196
gi|55664826|emb|CAH73501.1| sorting nexin family m ( 528) 3478 689.9 4.4e-196
gi|73981438|ref|XP_862093.1| PREDICTED: similar to ( 542) 3475 689.4 6.8e-196
gi|163781026|gb|ABY40802.1| sorting nexin family m ( 541) 3470 688.4 1.3e-195
gi|169410930|gb|ACA57940.1| sorting nexin family m ( 541) 3469 688.2 1.5e-195
gi|166092123|gb|ABY82103.1| sorting nexin family m ( 542) 3468 688.0 1.8e-195
gi|114559513|ref|XP_001172506.1| PREDICTED: sortin ( 532) 3464 687.2 3e-195
gi|166214988|sp|Q96L92.2|SNX27_HUMAN RecName: Full ( 541) 3464 687.2 3e-195
gi|190344045|gb|ACE75822.1| sorting nexin family m ( 538) 3449 684.3 2.3e-194
gi|126313853|ref|XP_001371747.1| PREDICTED: hypoth ( 615) 3407 676.1 7.5e-192
gi|109016237|ref|XP_001108530.1| PREDICTED: sortin ( 525) 3342 663.3 4.4e-188
gi|109016240|ref|XP_001108589.1| PREDICTED: sortin ( 529) 3328 660.6 3e-187
gi|109016234|ref|XP_001108415.1| PREDICTED: sortin ( 538) 3328 660.6 3e-187
gi|73981442|ref|XP_540318.2| PREDICTED: similar to ( 527) 3326 660.2 3.9e-187
gi|53133906|emb|CAG32282.1| hypothetical protein [ ( 507) 3147 625.2 1.3e-176
gi|90112007|gb|AAI14222.1| LOC414692 protein [Xeno ( 547) 3145 624.9 1.8e-176
gi|33990036|gb|AAH56315.1| Sorting nexin family me ( 569) 3012 598.9 1.2e-168
gi|94734455|emb|CAK11385.1| novel protein similar ( 567) 2905 578.0 2.4e-162
gi|119573809|gb|EAW53424.1| sorting nexin family m ( 530) 2872 571.5 2e-160
gi|148706795|gb|EDL38742.1| mCG5009, isoform CRA_b ( 448) 2853 567.7 2.3e-159
gi|149751458|ref|XP_001492429.1| PREDICTED: simila ( 448) 2844 565.9 7.9e-159
gi|194036216|ref|XP_001929665.1| PREDICTED: simila ( 448) 2843 565.7 9.1e-159
gi|149030743|gb|EDL85780.1| sorting nexin family m ( 448) 2840 565.2 1.4e-158
gi|183637596|gb|ACC64598.1| sorting nexin family m ( 511) 2840 565.2 1.5e-158
gi|15529066|gb|AAK97797.1| sorting nexin 27 [Homo ( 435) 2835 564.2 2.6e-158
gi|217030862|gb|ACJ74024.1| sorting nexin family m ( 437) 2834 564.0 3e-158
gi|73981440|ref|XP_862119.1| PREDICTED: similar to ( 448) 2834 564.0 3.1e-158
gi|119573813|gb|EAW53428.1| sorting nexin family m ( 435) 2830 563.2 5.2e-158
gi|109016243|ref|XP_001108477.1| PREDICTED: sortin ( 436) 2685 534.9 1.8e-149
gi|46329766|gb|AAH68958.1| LOC414692 protein [Xeno ( 443) 2598 517.9 2.3e-144
gi|189442303|gb|AAI67638.1| LOC100170579 protein [ ( 433) 2550 508.5 1.5e-141
gi|48734866|gb|AAH71825.1| SNX27 protein [Homo sap ( 367) 2381 475.4 1.2e-131
gi|81294345|gb|AAI07863.1| SNX27 protein [Homo sap ( 365) 2366 472.4 9.1e-131
gi|194036218|ref|XP_001927952.1| PREDICTED: simila ( 453) 2346 468.6 1.6e-129
gi|119573810|gb|EAW53425.1| sorting nexin family m ( 355) 2301 459.7 6e-127
gi|196475702|gb|ACG76411.1| sorting nexin family m ( 913) 2107 422.2 3.1e-115
gi|215504551|gb|EEC14045.1| phosphatase/kinase dom ( 530) 2082 417.1 6.1e-114
gi|91078172|ref|XP_967060.1| PREDICTED: similar to ( 506) 2079 416.5 8.9e-114
gi|212513417|gb|EEB15994.1| Sorting nexin-27, puta ( 509) 2058 412.4 1.5e-112
gi|108878813|gb|EAT43038.1| sorting nexin [Aedes a ( 506) 2035 407.9 3.5e-111
gi|190619201|gb|EDV34725.1| GF21468 [Drosophila an ( 542) 2021 405.2 2.4e-110
gi|190648649|gb|EDV45927.1| GG18475 [Drosophila er ( 537) 2017 404.4 4.1e-110
>>gi|74184617|dbj|BAE27921.1| unnamed protein product [M (526 aa)
initn: 3524 init1: 3524 opt: 3524 Z-score: 3725.2 bits: 698.9 E(): 8.7e-199
Smith-Waterman score: 3524; 100.000% identity (100.000% similar) in 519 aa overlap (1-519:8-526)
10 20 30 40 50
mKIAA0 GIHPSAPHRNGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVS
:::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 MADEDGEGIHPSAPHRNGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVS
10 20 30 40 50 60
60 70 80 90 100 110
mKIAA0 EGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 EGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR
70 80 90 100 110 120
120 130 140 150 160 170
mKIAA0 AGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 AGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVV
130 140 150 160 170 180
180 190 200 210 220 230
mKIAA0 YNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 YNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEY
190 200 210 220 230 240
240 250 260 270 280 290
mKIAA0 LEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 LEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQ
250 260 270 280 290 300
300 310 320 330 340 350
mKIAA0 AIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKWLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 AIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKWLF
310 320 330 340 350 360
360 370 380 390 400 410
mKIAA0 TTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLHEQRKMVMYLNMLRTCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 TTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLHEQRKMVMYLNMLRTCE
370 380 390 400 410 420
420 430 440 450 460 470
mKIAA0 GYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 GYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEE
430 440 450 460 470 480
480 490 500 510
mKIAA0 GMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY
::::::::::::::::::::::::::::::::::::::::::::::
gi|741 GMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY
490 500 510 520
>>gi|149030741|gb|EDL85778.1| sorting nexin family membe (526 aa)
initn: 3511 init1: 3511 opt: 3511 Z-score: 3711.4 bits: 696.4 E(): 5.1e-198
Smith-Waterman score: 3511; 99.615% identity (100.000% similar) in 519 aa overlap (1-519:8-526)
10 20 30 40 50
mKIAA0 GIHPSAPHRNGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVS
:::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 MADEDGEGIHPSAPHRNGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVS
10 20 30 40 50 60
60 70 80 90 100 110
mKIAA0 EGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 EGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR
70 80 90 100 110 120
120 130 140 150 160 170
mKIAA0 AGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 AGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVV
130 140 150 160 170 180
180 190 200 210 220 230
mKIAA0 YNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 YNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEY
190 200 210 220 230 240
240 250 260 270 280 290
mKIAA0 LEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQ
::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
gi|149 LEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGATVTVRVKKNSTTDQVYQ
250 260 270 280 290 300
300 310 320 330 340 350
mKIAA0 AIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKWLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 AIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKWLF
310 320 330 340 350 360
360 370 380 390 400 410
mKIAA0 TTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLHEQRKMVMYLNMLRTCE
:::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
gi|149 TTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRTCE
370 380 390 400 410 420
420 430 440 450 460 470
mKIAA0 GYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 GYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEE
430 440 450 460 470 480
480 490 500 510
mKIAA0 GMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY
::::::::::::::::::::::::::::::::::::::::::::::
gi|149 GMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY
490 500 510 520
>>gi|32425866|gb|AAH53495.1| Snx27 protein [Mus musculus (532 aa)
initn: 3510 init1: 3510 opt: 3510 Z-score: 3710.3 bits: 696.2 E(): 5.9e-198
Smith-Waterman score: 3510; 100.000% identity (100.000% similar) in 517 aa overlap (1-517:1-517)
10 20 30 40 50 60
mKIAA0 GIHPSAPHRNGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVSEGGQLRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|324 GIHPSAPHRNGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVSEGGQLRS
10 20 30 40 50 60
70 80 90 100 110 120
mKIAA0 INGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|324 INGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELI
70 80 90 100 110 120
130 140 150 160 170 180
mKIAA0 LTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVVYNVYMAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|324 LTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVVYNVYMAG
130 140 150 160 170 180
190 200 210 220 230 240
mKIAA0 RQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|324 RQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSI
190 200 210 220 230 240
250 260 270 280 290 300
mKIAA0 RVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|324 RVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVG
250 260 270 280 290 300
310 320 330 340 350 360
mKIAA0 MDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKWLFTTEEEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|324 MDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKWLFTTEEEVL
310 320 330 340 350 360
370 380 390 400 410 420
mKIAA0 LNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLHEQRKMVMYLNMLRTCEGYNEIIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|324 LNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLHEQRKMVMYLNMLRTCEGYNEIIF
370 380 390 400 410 420
430 440 450 460 470 480
mKIAA0 PHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEEGMAFCFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|324 PHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEEGMAFCFE
430 440 450 460 470 480
490 500 510
mKIAA0 YARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY
:::::::::::::::::::::::::::::::::::::
gi|324 YARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARSQQRDVAT
490 500 510 520 530
>>gi|166200308|sp|Q3UHD6.2|SNX27_MOUSE RecName: Full=Sor (539 aa)
initn: 3510 init1: 3510 opt: 3510 Z-score: 3710.2 bits: 696.2 E(): 5.9e-198
Smith-Waterman score: 3510; 100.000% identity (100.000% similar) in 517 aa overlap (1-517:8-524)
10 20 30 40 50
mKIAA0 GIHPSAPHRNGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVS
:::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 MADEDGEGIHPSAPHRNGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVS
10 20 30 40 50 60
60 70 80 90 100 110
mKIAA0 EGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 EGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR
70 80 90 100 110 120
120 130 140 150 160 170
mKIAA0 AGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 AGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVV
130 140 150 160 170 180
180 190 200 210 220 230
mKIAA0 YNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 YNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEY
190 200 210 220 230 240
240 250 260 270 280 290
mKIAA0 LEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 LEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQ
250 260 270 280 290 300
300 310 320 330 340 350
mKIAA0 AIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKWLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 AIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKWLF
310 320 330 340 350 360
360 370 380 390 400 410
mKIAA0 TTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLHEQRKMVMYLNMLRTCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 TTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLHEQRKMVMYLNMLRTCE
370 380 390 400 410 420
420 430 440 450 460 470
mKIAA0 GYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 GYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEE
430 440 450 460 470 480
480 490 500 510
mKIAA0 GMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY
::::::::::::::::::::::::::::::::::::::::::::
gi|166 GMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARSQQRDVAT
490 500 510 520 530
>>gi|22324239|dbj|BAC10333.1| PDZ protein Mrt1b [Rattus (526 aa)
initn: 3506 init1: 3506 opt: 3506 Z-score: 3706.1 bits: 695.4 E(): 1e-197
Smith-Waterman score: 3506; 99.422% identity (100.000% similar) in 519 aa overlap (1-519:8-526)
10 20 30 40 50
mKIAA0 GIHPSAPHRNGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVS
:::::.:::::::::::::::::::::::::::::::::::::::::::::::
gi|223 MADEDGEGIHPSTPHRNGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVS
10 20 30 40 50 60
60 70 80 90 100 110
mKIAA0 EGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|223 EGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR
70 80 90 100 110 120
120 130 140 150 160 170
mKIAA0 AGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|223 AGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVV
130 140 150 160 170 180
180 190 200 210 220 230
mKIAA0 YNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|223 YNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEY
190 200 210 220 230 240
240 250 260 270 280 290
mKIAA0 LEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQ
::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
gi|223 LEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGATVTVRVKKNSTTDQVYQ
250 260 270 280 290 300
300 310 320 330 340 350
mKIAA0 AIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKWLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|223 AIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKWLF
310 320 330 340 350 360
360 370 380 390 400 410
mKIAA0 TTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLHEQRKMVMYLNMLRTCE
:::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
gi|223 TTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRTCE
370 380 390 400 410 420
420 430 440 450 460 470
mKIAA0 GYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|223 GYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEE
430 440 450 460 470 480
480 490 500 510
mKIAA0 GMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY
::::::::::::::::::::::::::::::::::::::::::::::
gi|223 GMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY
490 500 510 520
>>gi|149030740|gb|EDL85777.1| sorting nexin family membe (539 aa)
initn: 3497 init1: 3497 opt: 3497 Z-score: 3696.5 bits: 693.6 E(): 3.4e-197
Smith-Waterman score: 3497; 99.613% identity (100.000% similar) in 517 aa overlap (1-517:8-524)
10 20 30 40 50
mKIAA0 GIHPSAPHRNGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVS
:::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 MADEDGEGIHPSAPHRNGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVS
10 20 30 40 50 60
60 70 80 90 100 110
mKIAA0 EGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 EGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR
70 80 90 100 110 120
120 130 140 150 160 170
mKIAA0 AGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 AGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVV
130 140 150 160 170 180
180 190 200 210 220 230
mKIAA0 YNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 YNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEY
190 200 210 220 230 240
240 250 260 270 280 290
mKIAA0 LEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQ
::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
gi|149 LEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGATVTVRVKKNSTTDQVYQ
250 260 270 280 290 300
300 310 320 330 340 350
mKIAA0 AIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKWLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 AIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKWLF
310 320 330 340 350 360
360 370 380 390 400 410
mKIAA0 TTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLHEQRKMVMYLNMLRTCE
:::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
gi|149 TTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRTCE
370 380 390 400 410 420
420 430 440 450 460 470
mKIAA0 GYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 GYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEE
430 440 450 460 470 480
480 490 500 510
mKIAA0 GMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY
::::::::::::::::::::::::::::::::::::::::::::
gi|149 GMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARSQQRDVAT
490 500 510 520 530
>>gi|166200309|sp|Q8K4V4.2|SNX27_RAT RecName: Full=Sorti (539 aa)
initn: 3492 init1: 3492 opt: 3492 Z-score: 3691.2 bits: 692.7 E(): 6.8e-197
Smith-Waterman score: 3492; 99.420% identity (100.000% similar) in 517 aa overlap (1-517:8-524)
10 20 30 40 50
mKIAA0 GIHPSAPHRNGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVS
:::::.:::::::::::::::::::::::::::::::::::::::::::::::
gi|166 MADEDGEGIHPSTPHRNGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVS
10 20 30 40 50 60
60 70 80 90 100 110
mKIAA0 EGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 EGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR
70 80 90 100 110 120
120 130 140 150 160 170
mKIAA0 AGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 AGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVV
130 140 150 160 170 180
180 190 200 210 220 230
mKIAA0 YNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 YNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEY
190 200 210 220 230 240
240 250 260 270 280 290
mKIAA0 LEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQ
::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
gi|166 LEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGATVTVRVKKNSTTDQVYQ
250 260 270 280 290 300
300 310 320 330 340 350
mKIAA0 AIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKWLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 AIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKWLF
310 320 330 340 350 360
360 370 380 390 400 410
mKIAA0 TTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLHEQRKMVMYLNMLRTCE
:::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
gi|166 TTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRTCE
370 380 390 400 410 420
420 430 440 450 460 470
mKIAA0 GYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 GYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEE
430 440 450 460 470 480
480 490 500 510
mKIAA0 GMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY
::::::::::::::::::::::::::::::::::::::::::::
gi|166 GMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARSQQRDVAT
490 500 510 520 530
>>gi|166200288|sp|A5PKA5.1|SNX27_BOVIN RecName: Full=Sor (541 aa)
initn: 3424 init1: 3424 opt: 3483 Z-score: 3681.7 bits: 690.9 E(): 2.3e-196
Smith-Waterman score: 3483; 99.037% identity (99.615% similar) in 519 aa overlap (1-517:8-526)
10 20 30 40 50
mKIAA0 GIHPSAPHRNGGGGGG--SGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ
::::.::::::::::: :::::::::::::::::::::::::::::::::::
gi|166 MADEDGEGIHPAAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ
10 20 30 40 50 60
60 70 80 90 100 110
mKIAA0 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDL
70 80 90 100 110 120
120 130 140 150 160 170
mKIAA0 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKF
130 140 150 160 170 180
180 190 200 210 220 230
mKIAA0 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE
190 200 210 220 230 240
240 250 260 270 280 290
mKIAA0 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQV
250 260 270 280 290 300
300 310 320 330 340 350
mKIAA0 YQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 YQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKW
310 320 330 340 350 360
360 370 380 390 400 410
mKIAA0 LFTTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLHEQRKMVMYLNMLRT
:::::::.:::::::::::::::::::::::::::::::::::::.::::::::::::::
gi|166 LFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRT
370 380 390 400 410 420
420 430 440 450 460 470
mKIAA0 CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD
430 440 450 460 470 480
480 490 500 510
mKIAA0 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY
::::::::::::::::::::::::::::::::::::::::::::::
gi|166 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARSQQRDVA
490 500 510 520 530 540
gi|166 T
>>gi|22324237|dbj|BAC10332.1| PDZ protein Mrt1a [Rattus (539 aa)
initn: 3481 init1: 3481 opt: 3481 Z-score: 3679.6 bits: 690.5 E(): 3e-196
Smith-Waterman score: 3481; 99.226% identity (99.807% similar) in 517 aa overlap (1-517:8-524)
10 20 30 40 50
mKIAA0 GIHPSAPHRNGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVS
:::::.:::::::::::::::::::::::::::::::::::::::::::::::
gi|223 MADEDGEGIHPSTPHRNGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVS
10 20 30 40 50 60
60 70 80 90 100 110
mKIAA0 EGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|223 EGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR
70 80 90 100 110 120
120 130 140 150 160 170
mKIAA0 AGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|223 AGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVV
130 140 150 160 170 180
180 190 200 210 220 230
mKIAA0 YNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
gi|223 YNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRELEEY
190 200 210 220 230 240
240 250 260 270 280 290
mKIAA0 LEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQ
::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
gi|223 LEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGATVTVRVKKNSTTDQVYQ
250 260 270 280 290 300
300 310 320 330 340 350
mKIAA0 AIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKWLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|223 AIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKWLF
310 320 330 340 350 360
360 370 380 390 400 410
mKIAA0 TTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLHEQRKMVMYLNMLRTCE
:::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
gi|223 TTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRTCE
370 380 390 400 410 420
420 430 440 450 460 470
mKIAA0 GYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|223 GYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEE
430 440 450 460 470 480
480 490 500 510
mKIAA0 GMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY
::::::::::::::::::::::::::::::::::::::::::::
gi|223 GMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARSQQRDVAT
490 500 510 520 530
>>gi|55664826|emb|CAH73501.1| sorting nexin family membe (528 aa)
initn: 3415 init1: 3415 opt: 3478 Z-score: 3676.5 bits: 689.9 E(): 4.4e-196
Smith-Waterman score: 3478; 98.464% identity (99.232% similar) in 521 aa overlap (1-519:8-528)
10 20 30 40 50
mKIAA0 GIHPSAPHRNGGGGGG--SGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ
:::::::::::::::: :::::::::::::::::::::::::::::::::::
gi|556 MADEDGEGIHPSAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQ
10 20 30 40 50 60
60 70 80 90 100 110
mKIAA0 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDL
::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
gi|556 VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVDL
70 80 90 100 110 120
120 130 140 150 160 170
mKIAA0 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKF
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
gi|556 IRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPRYKHVEQNGEKF
130 140 150 160 170 180
180 190 200 210 220 230
mKIAA0 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|556 VVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLE
190 200 210 220 230 240
240 250 260 270 280 290
mKIAA0 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|556 EYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQV
250 260 270 280 290 300
300 310 320 330 340 350
mKIAA0 YQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKW
::::::::::::::::::::::::.:::::::::::::::::.:::::::::::::::::
gi|556 YQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKW
310 320 330 340 350 360
360 370 380 390 400 410
mKIAA0 LFTTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLHEQRKMVMYLNMLRT
:::::::.:::::::::::::::::::::::::::::::::::::.::::::::::::::
gi|556 LFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRT
370 380 390 400 410 420
420 430 440 450 460 470
mKIAA0 CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|556 CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTD
430 440 450 460 470 480
480 490 500 510
mKIAA0 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY
::::::::::::::::::::::::::::::::::::::::::::::::
gi|556 EEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY
490 500 510 520
519 residues in 1 query sequences
2727779818 residues in 7921681 library sequences
Tcomplib [34.26] (2 proc)
start: Sat Mar 14 22:57:10 2009 done: Sat Mar 14 23:04:07 2009
Total Scan time: 935.860 Total Display time: 0.160
Function used was FASTA [version 34.26.5 April 26, 2007]