FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1673.ptfa, 704 aa vs ./tmplib.26680 library 1768313 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 9.6645+/-0.00653; mu= -7.1802+/- 0.432 mean_var=260.6916+/-64.333, 0's: 0 Z-trim: 4 B-trim: 0 in 0/36 Lambda= 0.0794 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0940 ( 722 res) mbg00277 ( 722) 1979 240 5.8e-64 >>mKIAA0940 ( 722 res) mbg00277 (722 aa) initn: 2380 init1: 1847 opt: 1979 Z-score: 1240.7 bits: 240.1 E(): 5.8e-64 Smith-Waterman score: 2552; 57.355% identity (68.770% ungapped) in 741 aa overlap (66-704:3-722) 40 50 60 70 80 90 mKIAA1 NATPNPAAFINNNTAANGSSAGSAWLFPAPATHNIQDEIL---GSEKAKSQQQEQQDPLE :....::..: .. . .::::..:. . mKIAA0 QQAAQTMQDDLLMDKSKTQPQSQQQQRQQQQQ 10 20 30 100 110 120 130 140 mKIAA1 KQQLSPSPGQ-EAGILP-ETEKAKAEEN---PG---DSSSENSNGKEKLRIESPVLTGFD .:::.: :: :: : .: : :.. :. :. :: .:...:::.: :.. mKIAA0 QQQLQPEPGAAEAPSTPLSSEIPKPEDSSAVPALSPASAPPAPNGPDKMQMESPLLPGLS 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA1 YQEATGLGTSTQPLTSSASSLT-GF-SNWSAAIAPSSSTIINEDASFFHQGGVPGASANN ... : :. ..::. .: :.:: ...: :: ::: :: .: : mKIAA0 FHQPPQQPPPPQEPTAPGASLSPSFGSTWS-----TGTTNAVED-SFF-QGITP----VN 100 110 120 130 140 210 220 230 240 250 mKIAA1 GALLFQNFPHHVSPGFGGSFSPQIG-PLSQHH-------PHHPH-FQHHHSQHQQQRRSP :..:::::::::.: :::.:::::: .::: :. :. : ..: .:::::: mKIAA0 GTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPQPPQPAQPPQAQPSQQRRSP 150 160 170 180 190 200 260 270 280 290 mKIAA1 ASPHPPPFTHRSAA-FNQLPHL---------------ANNLNKPPSPWSSYQSPSPTPSS ::: :...:::: ... : . : .. : :...:: . . mKIAA0 ASPSQAPYAQRSAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVN----A 210 220 230 240 250 300 310 320 330 340 350 mKIAA1 SWSPGGGGYGGWGASQGRDHRRGLNGGI-------TPLNSISPLKKNFASNHIQLQKYAR .:: .. .:: : ::: ::... :. .::: :::::: :.:: : :. : mKIAA0 AWSAPSNPWGGLQA--GRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFPR 260 270 280 290 300 310 360 370 380 390 400 mKIAA1 PSSAFAPKSWMEDSLNRAD---NIFPFPERPR---TFDMHSLESSLIDIMRAENDSIKGQ .. .. ::::::. :.: :..:: .: : ::..::::.::.:..:.... .::. mKIAA0 -AAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTDHEPLKGK 320 330 340 350 360 370 410 mKIAA1 --------------------------------------------------SSLFPMEDGF :::::.::.: mKIAA0 HYPPSGPPMSFADIMWRNHFAGRMGINFHHPGTDNIMALNTRSYGRRRGRSSLFPFEDAF 380 390 400 410 420 430 420 430 440 450 460 470 mKIAA1 LDDGRGDQPLHSGLGSP-HCFTHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPL :::..::: : :::.:: .: ::::::::::::::::::::::::::::::::::::: mKIAA0 LDDSHGDQALSSGLSSPTRC---QNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPL 440 450 460 470 480 490 480 490 500 510 520 530 mKIAA1 IVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQI .::::::::::::::::::::::::.:::::::::::.:::::::::::::::::::::: mKIAA0 VVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSPTIKDKPVQI 500 510 520 530 540 550 540 550 560 570 580 590 mKIAA1 RPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: mKIAA0 RPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPEL 560 570 580 590 600 610 600 610 620 630 640 650 mKIAA1 KYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGGK ::::::::::::::::::::::::::::::..:::::::::::::::.::::::.::::: mKIAA0 KYPKGAGRVAFSNQQSYIAAISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGK 620 630 640 650 660 670 660 670 680 690 700 mKIAA1 FAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN :::::::::::::::::::::.:::::::::::::::::::::::. :::. mKIAA0 FAPFFCANVTCLQYYCEYCWASIHSRAGREFHKPLVKEGGDRPRHVPFRWS 680 690 700 710 720 704 residues in 1 query sequences 1768313 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:50:39 2006 done: Mon Mar 27 10:50:40 2006 Scan time: 0.860 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]