FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00240.ptfa, 769 aa
 vs ./tmplib.26680 library

1768248 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.7237+/-0.00572; mu= -0.8339+/- 0.378
 mean_var=261.6330+/-63.753, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.0793

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00348  ( 1089 res)   mth00001                  (1089)  222   39  0.0033


>>mFLJ00348  ( 1089 res)   mth00001                       (1089 aa)
 initn: 362 init1: 139 opt: 222  Z-score: 150.0  bits: 39.0 E(): 0.0033
Smith-Waterman score: 343;  27.341% identity (31.533% ungapped) in 534 aa overlap (23-508:579-1089)

                       10        20        30        40        50  
mFLJ00         SGVEMRTPQRDPETHLPTRKLPHLPLTVCVVASLRPTLPCVTTMDSTAERRC
                                     :   .::. :    .: :.. .  : :  :
mFLJ00 VNTLLAGSLLSQGEHQSYRDQVAEVLQGFLHPDAAVCARAI--NVLYCLSELRHT-ELAC
      550       560       570       580         590       600      

               60             70        80             90       100
mFLJ00 NGH--LESRDLALMVA-----ALAYNQWFTKLYCK-----DLRLGSEVLEQVLHTLSKSG
       . .  ..:  :: :..     ::::   .. . :.     .: :...::...:  :    
mFLJ00 SVEEAMRSGTLAGMTSPSHRTALAYLLQMSDI-CSPEADFSLCLSQHVLQSLLPQLLYCQ
         610       620       630        640       650       660    

              110       120       130       140       150       160
mFLJ00 SLEELVLDNAGLKTDFVQKLAGVFGENGSCVLHALILSHNPIEDKGFLSLSQQLLCFPTG
       ::.   :::  .. : :..: :    . .: .. . :..: : .::  .:...::    .
mFLJ00 SLR---LDNNQFQ-DPVMELLGSVLSGKDCRIRKISLAENQIGNKGAKALARSLLV-NRS
             670        680       690       700       710          

              170       180       190       200       210          
mFLJ00 LTKLCLAKTAISPRGLQALGQTFGANPAFASSLRYLDLSKNPGLLATDEA---NALYSFL
       :  : : ...:.: : .::....  : ...:     .. :. :.. . ::   :   :.:
mFLJ00 LITLDLRSNSIGPPGAKALADALKINRTLTSLSLQSNVIKDDGVMCVAEALVSNQTISML
     720       730       740       750       760       770         

       220       230       240       250       260       270       
mFLJ00 AQPNALVHLDLSGTDCAVDMLLGALLHGCCSHLTYLNLARNSCSHRKGREAPPAFKQFFS
          . :.   : :..  .: :           :  : .. :. . : .     :.:   .
mFLJ00 QLQKNLI--GLIGAQQMADALKQN------RSLKALMFSSNTIGDRGAIALAEALK--VN
     780         790       800             810       820           

       280       290       300       310       320       330       
mFLJ00 SVYTLSHVNLSATRLPLEALRALLQGLSLNSHLSDLHLDLSSCELRSAGAQALQEQLGAV
       ..  : ...:... .   .. .:...:  :. ::.:.:  .:  .   ::::: . :   
mFLJ00 QI--LENLDLQSNSISDMGVTVLMRALCSNQTLSSLNLRENS--ISPEGAQALTQALCRN
     830         840       850       860         870       880     

       340       350        360       370         380          390 
mFLJ00 TCIGSLDLSDNGF-DSDLLTLVPALGKNKSLKHLFLGKNF--NVKAKTLEEILH---KLV
       . .  :::. : . :    ... :.:.:.:: :: :  ::     :..: . :.    :.
mFLJ00 NTLKHLDLTANLLHDRGAQAIAVAVGENHSLTHLHLQWNFIQAGAARALGQALQLNRTLT
         890       900       910       920       930       940     

              400       410            420                   430   
mFLJ00 QL-IQEEDCSLQSLSVADSRLKLRTSIL-----INALGS------------NTCLAKVDL
        : .::.  . .. : . . ::. :...     . ..::            :  :  .::
mFLJ00 TLDLQENAIGDEGASSVAGALKVNTTLIALYLQVASIGSQGAQALGEALTVNRTLEILDL
         950       960       970       980       990      1000     

           440       450       460       470       480          490
mFLJ00 SGNGMEDIGAKMLSKALQINSSLRTILWDRNNTSALGFLDIARALESNHTLRFMSF---P
        :: .   ::: :..::..::::: .  ..:. .  : . .: ::  :: :. ...   :
mFLJ00 RGNDVGAAGAKALANALKLNSSLRRLNLQENSLGMDGAIFVASALSENHGLHHINLQGNP
        1010      1020      1030      1040      1050      1060     

                   500        510       520       530       540    
mFLJ00 VSD-----ISQAYRS-APERTEDVWQKIQWCLVRNNHSQTCPQEQAFRLQQGLVTSSAEQ
       ...     ::.: .. ::  : ..                                    
mFLJ00 IGESAARMISEAIKTNAPTCTVEI                                    
        1070      1080                                             




769 residues in 1 query   sequences
1768248 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:08:31 2006 done: Mon Mar 27 10:08:32 2006
 Scan time:  0.880 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]