FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1123.ptfa, 1389 aa vs ./tmplib.26680 library 1767628 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 9.8450+/-0.00729; mu= -3.8865+/- 0.484 mean_var=316.8027+/-75.353, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.0721 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4255 ( 1460 res) mbg05755 (1460) 2238 247 1.5e-65 >>mKIAA4255 ( 1460 res) mbg05755 (1460 aa) initn: 2948 init1: 1846 opt: 2238 Z-score: 1269.3 bits: 247.4 E(): 1.5e-65 Smith-Waterman score: 4389; 55.413% identity (61.068% ungapped) in 1404 aa overlap (1-1371:49-1355) 10 20 30 mKIAA1 LPDRKNFDSLLWAIVTVFQILTQEDWNKVL .:::::::::::::::::::::::::: :: mKIAA4 LLMLFIFIFSILGMHLFGCKFSLKTDSGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVL 20 30 40 50 60 70 40 50 60 70 80 90 mKIAA1 YNGMASTSSWAALYFIALMTFGNYVLFNLLVAILVEGFQAEEIGKREDTSGQLSCIQLPV :::::::::::::::.::::::::::::::::::::::::: . : ::. mKIAA4 YNGMASTSSWAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDATRSDTDE--------- 80 90 100 110 120 100 110 120 130 140 mKIAA1 NSQGGDATKSESEPDFFS-PSVDGDGDRKKRLALVALGEHSELRKSLLPPLIIHTAATPM : :... : :: . .: . . ::.. : : : : :: :::: ::::::: mKIAA4 -----DKTSTHLEEDFDKLRDVRATEMKMYSLAVTPNG-HLEGRGSLPPPLITHTAATPM 130 140 150 160 170 180 150 160 170 180 190 200 mKIAA1 SLPKSSS-TGVGEALGSGSRRTSSSGSAEPGTAHHEMKSPPSARSSPHSPWSAASSWTSR :::: ....: . ::: :::::..: . ..:: : :::: .::. :. .:: mKIAA4 PTPKSSPHLDMAHTLLD-SRR-SSSGSVDPQLG--DQKSLASLRSSPCAPWGPNSAGSSR 190 200 210 220 230 210 220 230 240 250 260 mKIAA1 RSSRNSLGRAPSLKRRSPSGERRSLLSGEGQESQDEE-ESSEEDRASPAGSDHRHRGSLE ::: ::::::::::::: :::.:::::::. : :.: :.:. . .. :.. :.. mKIAA4 RSSWNSLGRAPSLKRRSQCGERESLLSGEGKGSTDDEAEDSRPNSGTHPGASPGPRATPL 240 250 260 270 280 290 270 280 290 300 310 320 mKIAA1 REAKSSFDLPDTLQVPGLHRTASGRSSASEHQDCNGKSASGRLARTLRADDPPLDGDDGD :.:.: : : :. .. .::::. .. :: :. :. . : mKIAA4 RRAESLGHRSTMDLCPP--RPAT--LLPTKFRDCNGQMVALPSEFFLRIDSHKEDAAEFD 300 310 320 330 340 350 330 340 350 360 370 380 mKIAA1 DEGNLSKGERLRAWVRARLPACCRERDSWSAYIFPPQSRFRLLCHRIITHKMFDHVVLVI :. . : ::. .. : : :.::. :.::::.:.:. :...:.::::::::::. mKIAA4 DDIEDSCCFRLHKVLEPYAPQWCSSRESWALYLFPPQNRLRVSCQKVIAHKMFDHVVLVF 360 370 380 390 400 410 390 400 410 420 430 440 mKIAA1 IFLNCITIAMERPKIDPHSAERIFLTLSNYIFTAVFLAEMTVKVVALGWCFGEQAYLRSS :::::::::.::: ::: :.:: ::..:::::::.:..:: ::::::: .::.:::.:: mKIAA4 IFLNCITIALERPDIDPGSTERAFLSVSNYIFTAIFVVEMMVKVVALGLLWGEHAYLQSS 420 430 440 450 460 470 450 460 470 480 490 500 mKIAA1 WNVLDGLLVLISVIDILVSMVSDSGTKILGMLRVLRLLRTLRPLRVISRAQGLKLVVETL ::::::::::.:..::.:...: .:.::::.::::::::::::::::::: ::::::::: mKIAA4 WNVLDGLLVLVSLVDIIVAVASAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETL 480 490 500 510 520 530 510 520 530 540 550 560 mKIAA1 MSSLKPIGNIVVICCAFFIIFGILGVQLFKGKFFVCQGEDTRNITNKSDCAEASYRWVRH .:::.::::::.:::::::::::::::::::::. :.: ::::::.:..: : :::::. mKIAA4 ISSLRPIGNIVLICCAFFIIFGILGVQLFKGKFYYCEGTDTRNITTKAECHAAHYRWVRR 540 550 560 570 580 590 570 580 590 600 610 620 mKIAA1 KYNFDNLGQALMSLFVLASKDGWVDIMYDGLDAVGVDQQPIMNHNPWMLLYFISFLLIVA :::::::::::::::::.::::::.::::::::::.::::..:::::::::::::::::. mKIAA4 KYNFDNLGQALMSLFVLSSKDGWVNIMYDGLDAVGIDQQPVQNHNPWMLLYFISFLLIVS 600 610 620 630 640 650 630 640 650 660 670 680 mKIAA1 FFVLNMFVGVVVENFHKCRQHQEEEEARRREEKRLKRLEKKRRNLMLDDVIASGSSASAA ::::::::::::::::::::::: :::::::::::.:::..:: mKIAA4 FFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLERRRR----------------- 660 670 680 690 690 700 710 720 730 740 mKIAA1 SEAQCKPYYSDYSRFRLLVHHLCTSHYLDLFITGVIGLNVVTMAMEHYQQPQILDEALKI .:: .:::.:::. : .: :::::::::::: .: :::.::.::::.::. :::::: mKIAA4 -KAQRRPYYADYSHTRRSIHSLCTSHYLDLFITFIICLNVITMSMEHYNQPKSLDEALKY 700 710 720 730 740 750 750 760 770 780 790 800 mKIAA1 CNYIFTVIFVLESVFKLVAFGFRRFFQDRWNQLDLAIVLLSIMGITLEEIEVNASLPINP :::.::..::.:...:::::::::::.::::::::::::::::::.:::::.::.::::: mKIAA4 CNYVFTIVFVFEAALKLVAFGFRRFFKDRWNQLDLAIVLLSIMGIALEEIEMNAALPINP 760 770 780 790 800 810 810 820 830 840 850 860 mKIAA1 TIIRIMRVLRIARVLKLLKMAVGMRALLDTVMQALPQVGNLGLLFMLLFFIFAALGVELF :::::::::::::::::::::.:::::::::.:::::::::::::::::::.:::::::: mKIAA4 TIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELF 820 830 840 850 860 870 870 880 890 900 910 920 mKIAA1 GDLECDETHPCEGLGRHATFRNFGMAFLTLFRVSTGDNWNGIMKDTLRDCDQEST-C--Y : :::.: .:::::.::::: :::::::::::::::::::::::::::.: .:. : : mKIAA4 GRLECSEDNPCEGLSRHATFTNFGMAFLTLFRVSTGDNWNGIMKDTLRECTREDKHCLSY 880 890 900 910 920 930 930 940 950 960 970 980 mKIAA1 NTVISPIYFVSFVLTAQFVLVNVVIAVLMKHLEESNKEAKEEAELEAELELEMKTLSPQP ..::.:::.:::.:::::::::.::::::::::::::.:.::..::.:::. mKIAA4 LPALSPVYFVTFVLVAQFVLVNVVVAVLMKHLEESNKEAREDAEMDAEIELEI------- 940 950 960 970 980 990 990 1000 1010 1020 1030 1040 mKIAA1 HSPLGSPFLWPGVEGVNSPDSPKPGAPHTTAHIGAASSGFSLEHPTMVPHTEEGPVPLGP : .::. : . . .: : : mKIAA4 -------------------------AQGSTAQ------------PPSTAQESQGTDPDTP 1000 1010 1050 1060 1070 1080 1090 1100 mKIAA1 DLLTVRKSGVSRTHSLPNDSYMCRNGSTAERSLGHRGWGLP-KAQSGSILSVHSQPADTS .::.::: .::: :::::::: : . : .: . .. .: . :.:: . mKIAA4 NLLVVRKVSVSRMLSLPNDSYMFRPVAPAAAPHSHPLQEVEMETYTGPVTSAHSPSLEPR 1020 1030 1040 1050 1060 1070 1110 1120 1130 1140 1150 1160 mKIAA1 CILQLPKDAHYLLQPHGA--PTWGAIPKLPPPGRSPLAQRPLRRQAAIRTDSLDVQGLGS .:.:. : .: : : . :. : :: .: : :: :....::. : . mKIAA4 TSFQVPSAAS---SPARASDPLCALSPRDTP--RSLSLSRILYRQEAMHAESLEGQIDDA 1080 1090 1100 1110 1120 1170 1180 1190 1200 1210 mKIAA1 REDLLSEVSGPSCPLTRSSSFWGG-SSIQVQQRSGSQSKVSKH------IRLPAPCPGLE :: . . . :. .. :.. : : . : .: .. :: : : : . mKIAA4 GEDGIPDYTEPAENISMSQAPLGTLRSPPCSPRPAS-VRTRKHTFGQHCISSRPPTLGGD 1130 1140 1150 1160 1170 1180 1220 1230 1240 1250 1260 mKIAA1 PSWAKDPQETRSSLELDTELSWISGDLLPSSQEE-PL-SP--------RDLKKCYSVEAQ . : :: . . : .. : . . : : : : :: :: .. ::.:: mKIAA4 DAEAADPADEEVSHITSSAHPWPATE--PHSPEASPTASPAKGTVGSGRDPHRFCSVDAQ 1190 1200 1210 1220 1230 1240 1270 1280 1290 1300 1310 1320 mKIAA1 SCRRRPGSWLDEQRRHSIAVSCLDSGSQPRLCPSPSSLGGQPLGGPGSRPKKKLSPPSIS : .:: : :: :. ::.:. . ... . :.: :::.::: :: mKIAA4 SFLDKPGRP-DAQRWSSVE---LDNGDGHLESGEVRARASELEPALGARRKKKMSPPCIS 1250 1260 1270 1280 1290 1300 1330 1340 1350 1360 1370 mKIAA1 IDPP-ESQGP-RPPCSPG--VCLRRRAPASDS---KDPSASSPLDSTAASPSPKKDALSL :::: :..: ::: . : . ::::.:. .. .: :. .:...: : mKIAA4 IDPPTEDEGSSRPPAAEGGNTTLRRRTPSCEAALHRDCPESTEGPGTGGDPVAKGERWGQ 1310 1320 1330 1340 1350 1360 1380 mKIAA1 SGLSSDPTDLDP mKIAA4 ASCRAEHLTVPNFAFEPLDMGGPGGDCFLDSDQSVTPEPRVSSLGAIVPLILETELSMPS 1370 1380 1390 1400 1410 1420 1389 residues in 1 query sequences 1767628 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:36:41 2006 done: Mon Mar 27 10:36:42 2006 Scan time: 1.150 Display time: 0.190 Function used was FASTA [version 3.4t11 Apr 17, 2002]