FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4067.ptfa, 245 aa
 vs ./tmplib.26680 library

1768772 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.9056+/-0.00421; mu= 16.6018+/- 0.282
 mean_var=79.9014+/-18.356, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1435

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0404  ( 1931 res)   mpf01162                  (1931)  989  215 2.2e-56


>>mKIAA0404  ( 1931 res)   mpf01162                       (1931 aa)
 initn: 1007 init1: 565 opt: 989  Z-score: 1104.8  bits: 214.9 E(): 2.2e-56
Smith-Waterman score: 989;  65.044% identity (67.123% ungapped) in 226 aa overlap (21-241:1702-1925)

                         10        20          30        40        
mKIAA4           YVVSKWESPDLQMYLYFFFALTVIC--SSLLGIDKLFSYAISEWLSDIKK
                                     :  .:   .:::.::.. ::..:::.::.:
mKIAA0 YHGKHVTVDQVGTFMGLLIGLAQLNCSELKLKRLCCRHGLLGVDKVLCYALNEWLQDIRK
            1680      1690      1700      1710      1720      1730 

       50        60        70        80        90       100        
mKIAA4 NQLPGILGGVGPMHSLVQLVQGLKDLVWLPIEQYRKDGRIVRGFQRGAASFGTSTAMAAL
       :::::.:::::::::.::: ::..::.::::::::::::..::.::::::::.::: :::
mKIAA0 NQLPGLLGGVGPMHSVVQLFQGFRDLLWLPIEQYRKDGRLIRGLQRGAASFGSSTASAAL
            1740      1750      1760      1770      1780      1790 

      110       120       130          140       150       160     
mKIAA4 ELTNRMVQTIQAAAETAYDMVSPST---LSIEPKKAKRFPHHRLAHQPVDLREGVAKAYS
       ::.::.::.:::.:::.::..::..    :.. :...:  . : ..::.:::::.::::.
mKIAA0 ELSNRLVQAIQATAETVYDILSPASPVSRSLQDKRSSR--KLRRGQQPADLREGMAKAYD
            1800      1810      1820        1830      1840         

         170       180       190       200       210       220     
mKIAA4 VVKEGITDTAQTIYETAAREHESRGVTGAVGEVLRQIPPAVVRPLIVATEATSNVLGGMR
       .:.::: :::::: ..:.: ::..:.::::: :.::.::.::.:.:::::::::::::::
mKIAA0 AVREGILDTAQTICDVASRGHEQKGLTGAVGGVIRQLPPTVVKPIIVATEATSNVLGGMR
    1850      1860      1870      1880      1890      1900         

         230       240       
mKIAA4 NQIRPDVRQDESQKWRHGED  
       ::: ::...:.. :::      
mKIAA0 NQILPDAHKDHALKWRLEEAQD
    1910      1920      1930 




245 residues in 1 query   sequences
1768772 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:00:53 2006 done: Mon Mar 27 11:00:54 2006
 Scan time:  0.480 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]