FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1761.ptfa, 760 aa vs ./tmplib.26680 library 1768257 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 9.0156+/-0.00709; mu= -3.0151+/- 0.472 mean_var=269.0903+/-64.345, 0's: 0 Z-trim: 1 B-trim: 0 in 0/36 Lambda= 0.0782 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1170 ( 771 res) mbg11062 ( 771) 1389 170 7.1e-43 >>mKIAA1170 ( 771 res) mbg11062 (771 aa) initn: 2630 init1: 1020 opt: 1389 Z-score: 862.0 bits: 170.2 E(): 7.1e-43 Smith-Waterman score: 2982; 60.526% identity (71.029% ungapped) in 798 aa overlap (52-760:1-769) 30 40 50 60 70 80 mKIAA1 PPPATAQPPPGAPRAAGGLLPGGKAREFNRNQRKDSEGYSESPDLEFEYADTDKWAAELA : :..::: . : :::::.:.: ::::. mKIAA1 NLRRESEGSVDCPTLEFEYGDSDGHAAELS 10 20 30 90 100 110 120 130 140 mKIAA1 ELYSYTEGPEFLMNRKCFEEDFRIHVSD-KKWTELDTNQHRTHAMRLLDGLEVTAREKRL :::::::. :: :::::::::: .:.: :.: ::. . ..:..: ::: :::..::::: mKIAA1 ELYSYTENLEFTTNRKCFEEDFRTQVQDTKEWLELEEDAQKTYVMGLLDRLEVVSREKRL 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA1 KVARAILYVAQGTFGECSSEAEVQFWMRYNIFLLLEVGTFNALVELLNMEIDNSAACSSA :::::.::.::::::::.::..: : ::: ::: ..:::.:..:::.:::::: : ::: mKIAA1 KVARAVLYLAQGTFGECDSEVDVLHWSRYNCFLLYQMGTFSAFLELLHMEIDNSQASSSA 100 110 120 130 140 150 210 220 230 240 250 260 mKIAA1 VRKPAISLADSTDLRVLLNIMYLIVETVHQDCDGDKAEWRTMRQTFRAELGSPLYNNEPF .::::.:.::::.:::::..:::.::... . . : ::: :.:::.::. .:.::: mKIAA1 LRKPAVSIADSTELRVLLSVMYLMVENIRLEREIDPCGWRTARETFRTELSFSTHNEEPF 160 170 180 190 200 210 270 280 290 300 310 320 mKIAA1 AIMLFGMVTKFCSGHAPHFPMKKVLLLLWKTVLCTLGGFEELQSMKAEKRTLLGLPPLPE :..::.:::::::: :::::.:::::::::.:. ::::::.::..: .::. :::::: : mKIAA1 ALLLFSMVTKFCSGLAPHFPIKKVLLLLWKVVMFTLGGFEHLQALKIQKRAELGLPPLAE 220 230 240 250 260 270 330 340 350 360 370 mKIAA1 DSIKVIRNMRAASPPASASDLIEQQ------QKRGRR--EHKALIKQDNLDAFNERDPYK :::.:...:::::::. . :: :.: . :::: ... : :::.:: .:::: .: mKIAA1 DSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYNERDLFK 280 290 300 310 320 330 380 390 400 410 420 mKIAA1 ADD-SREEEEEN--DDDSSLEGEAFPLERDEVMPPP-LQHP-QTDRLTCPKGLPWAPKVR ... . :::::. : . .:.:: ::.: ..::: : : .:::.. ::::::::::: mKIAA1 TEEPATEEEEESAADGERTLDGELDLLEQDPLVPPPPSQTPLSTDRVAFPKGLPWAPKVR 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA1 EKDIEMFLESSRSKFIGYTLGSDTNTVVGLPRPIHESIKTLKQHKYTSIAEVQAQMEEEY .:::: ::: ::.::::.:::.::.:.::::::::::.:::::::: :::..: . ::: mKIAA1 QKDIEHFLEMSRNKFIGFTLGQDTDTLVGLPRPIHESVKTLKQHKYISIADIQIKNEEEL 400 410 420 430 440 450 490 500 510 520 530 540 mKIAA1 LRSPLSGGEEEVEQVPAETLYQGLLPSLPQYMIALLKILLAAAPTSKAKTDSINILADVL . ::: ::: : ..:.: ::::.: :::::::::::::::::::::::::::::::::: mKIAA1 EKCPLSLGEEVVPETPSEILYQGMLYSLPQYMIALLKILLAAAPTSKAKTDSINILADVL 460 470 480 490 500 510 550 mKIAA1 PEEMP------------------------------------------------------- ::::: mKIAA1 PEEMPVTVLQSMKLGIDVNRHKEIIVKSISALLLLLLKHFKLNHIYQFEYVSQHLVFANC 520 530 540 550 560 570 560 570 580 590 mKIAA1 --------------------SISVLDYPHCVVNELPELTAESLEAGDNNQFCWRNLFSCI :::::::: :....:::::.::::::::.::::::::::: mKIAA1 IPLILKFFNQNILSYITAKNSISVLDYPCCTIQDLPELTTESLEAGDNSQFCWRNLFSCI 580 590 600 610 620 630 600 610 620 630 640 650 mKIAA1 NLLRILNKLTKWKHSRTMMLVVFKSAPILKRALKVKQAMMQLYVLKLLKVQTKYLGRQWR ::::.::::::::::::: :::.:::::::::: mKIAA1 NLLRLLNKLTKWKHSRTM----------------------------LLKIQTKYLGRQWR 640 650 660 660 670 680 690 700 710 mKIAA1 KSNMKTMSAIYQKVRHRLNDDWAYGNDLDARPWDFQAEECALRANIERFNARRYDRTHSN :::::::::::::::::.:::::::::.::::::::::::.:::::: ::.::::. ... mKIAA1 KSNMKTMSAIYQKVRHRMNDDWAYGNDIDARPWDFQAEECTLRANIEAFNSRRYDKPQDS 670 680 690 700 710 720 720 730 740 750 760 mKIAA1 PDFLPVDNCLQSVLGQRVDLPEDFQMNYDLWLEREVFSKPISWEELLQ .: :::::::::::::.::::::...:.:::::::::.:: :::::: mKIAA1 -EFSPVDNCLQSVLGQRLDLPEDFHYSYELWLEREVFSQPICWEELLQNH 730 740 750 760 770 760 residues in 1 query sequences 1768257 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:52:40 2006 done: Mon Mar 27 10:52:41 2006 Scan time: 0.880 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]