FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0314.ptfa, 886 aa vs ./tmplib.26680 library 1768131 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 10.5051+/-0.00811; mu= -8.9471+/- 0.536 mean_var=378.1956+/-91.919, 0's: 0 Z-trim: 10 B-trim: 0 in 0/36 Lambda= 0.0660 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1113 ( 1071 res) mpm06042 (1071) 309 44 0.00012 mKIAA1476 ( 1369 res) mfj36368 (1369) 272 41 0.0016 mKIAA0298 ( 208 res) mbg08362 ( 208) 251 38 0.0018 mKIAA4005 ( 818 res) mfj27181 ( 818) 240 37 0.0094 >>mKIAA1113 ( 1071 res) mpm06042 (1071 aa) initn: 469 init1: 140 opt: 309 Z-score: 175.8 bits: 44.0 E(): 0.00012 Smith-Waterman score: 370; 23.934% identity (32.402% ungapped) in 727 aa overlap (180-882:468-1028) 150 160 170 180 190 200 mKIAA0 TSTPSSARASVKRELTGSNASTSPARSRGRPRKPKPGSLQPQHLQSTIRECDSEQAQ--- : . . ..:. ::.:. . .: : mKIAA1 LVIESKPAPGYTPNVVVGQVPPGTNHISKTPGQINLAQLRLQHMQQQVYAQKHQQLQQMR 440 450 460 470 480 490 210 220 230 240 250 260 mKIAA0 TQVHPEPQPQLQAPTQPHLQPSSGFLEPEGSP--FSLGQSQH-DLSQSAFLSWLSQTQSH : : : : : :: : . .. . . : .:. :. ... .:: :.: mKIAA1 LQQPPAPIPTTTATTQQHPRQAAPQMLQQQPPRLISVQTMQRGNMNCGAF-------QAH 500 510 520 530 540 550 270 280 290 300 310 320 mKIAA0 NSLLSSSVLTPDSSPGKLDSAPSQSLEEPEPDEAQSCPGPQGPWFNFSAQIPCD-AAPTP . :.... . : . :::. :. .:. .. .: :: ::. ::. : . ..:: mKIAA1 QMRLAQNAARIPGIPRH--SAPQYSMMQPHLQRQHSNPGHAGPFPVVSAHNPINPTSPTT 560 570 580 590 600 330 340 350 360 370 mKIAA0 PPAVSEDQ-PT-PS---LQLLAS-SKPMNTPGAANPCSPVQL---SSTHLPGGTPKRLSG .. .. :: :: ..:. : ..: : :. . :.:: .:. : . . .:: mKIAA1 ATMANANRGPTSPSVTAIELIPSVTNPENLPSLPD-IPPIQLEDAGSSSLDNLLSRYISG 610 620 630 640 650 660 380 390 400 410 420 430 mKIAA0 DSEEMSQSPTGLGQPKRRGRP-PSKFFKQVEQHYLTQLTAQPIPPEMCSGWWWIRDPETL . .. .::. .:. : :: . . :. . : .: : : mKIAA1 S--HLPPQPTSTMNPS----PGPSALSPGS-----SGLSNSHTP---------VRPPSTS 670 680 690 700 440 450 460 470 480 490 mKIAA0 DVLLKALHPRGIR--EKALHKHLSKHKDFLQEVCLQPLTDPIFEPNELPALEEGVMSWSP .. .. . : ::. :. : . :: :. :: . :.: mKIAA1 STGSRGSCGSSGRTAEKSAHSFKSDQVKVKQE----------------PGTEEEICSFSG 710 720 730 740 750 500 510 520 530 540 550 mKIAA0 KEKTYETDLAVLQWVEELEQRVVLSDLQIRGWTCPTPDSTREDLTYCEHLPDSPEDIPWR : .:. :. : . : . .:::. mKIAA1 AVKQEKTE-----------------------------DGRR---SAC--MLSSPES---- 760 770 560 570 580 590 600 610 mKIAA0 GRGREGTVPQRQNNNPLDLAVMRLAVLEQNVERRYLREPLWAAHEVVVEKALLSTPNGAP . .: ..: :. . :. ::..:. :: : ...: . :: mKIAA1 -----SLTPPLSTNLHLESELDTLTGLENHVKT----EPT-DISESCKQSGLSNLVNGK- 780 790 800 810 820 620 630 640 650 660 670 mKIAA0 DGTSTEISYEITPRVRVWRQTLERCRSAAQVCLCMGQLERSIAWEKSVNKVTCLVCRKGD .: :. ..: .:.. :. . . . . :. : ::..: mKIAA1 -----------SP----IRNLMHR---SARIG---GDGNSK---DDDPNEDWCAVCQNGG 830 840 850 680 690 700 710 720 mKIAA0 NDEFLLLCDGCDRGCHIYCHRPKMEAVPEGDWFCAVC--LSQVEEEYTQRPGFPKRGQKR . :: :. : . :. :: : . . : :::.:. : ... : :: mKIAA1 D---LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEY------------- 860 870 880 890 900 730 740 750 760 770 780 mKIAA0 KSSFPLTFPEGDSRRRMLSRSRDSPAVPRYPEDGLSPPKRRRHSMRSHHSDLTFCEIILM . :. : .. . : .:::: .:. :: .:. mKIAA1 ---------DCDN---MQHSKKGKTA------QGLSPVDQRK------------CERLLL 910 920 930 790 800 810 820 830 840 mKIAA0 EMESHDAAWPFLEPVNPRLVSGYRRVIKNPMDFSTMRERLLRGG---YTSSEEFAADALL . :. . : ::: : . .: ..::.:::.::....: . : ..:.::. : mKIAA1 YLYCHELSIEFQEPV-PVSIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRL 940 950 960 970 980 990 850 860 870 880 mKIAA0 VFDNCQTFNEDDSEVGKAGHVMRRFFESRWEEFYQGKQANL .: ::. ::: ::::.:::... .::.. :.:. . mKIAA1 IFKNCERFNEGDSEVAKAGKAVALYFEDKLSEIYSDRTFTPLPEFEQDEDDGEVTEDSDE 1000 1010 1020 1030 1040 1050 mKIAA1 DFIQPRRKRLKSDERPVHIK 1060 1070 >>mKIAA1476 ( 1369 res) mfj36368 (1369 aa) initn: 296 init1: 245 opt: 272 Z-score: 155.5 bits: 40.6 E(): 0.0016 Smith-Waterman score: 278; 37.107% identity (43.704% ungapped) in 159 aa overlap (1-136:1211-1368) 10 20 mKIAA0 RLRRLKTALAKRTGRPEV---MMEGAED-- .::.:. ::.::. .. . : :. mKIAA1 LACSKSVVSEIDKNIEYMSNLRRDKWMVEGKLRKLRIIHAKKTGKRDASGGIDLGEEQHP 1190 1200 1210 1220 1230 1240 30 40 50 60 mKIAA0 -GL---GRRRSSRIME--------ETSGIEEEEEEENTTAVHGRRGRK------EGEIDV : ::.: . . . : . .:.::. ..:.: : : : mKIAA1 LGTPTPGRKRRRKGGDSDYDDDDDDDSDDQADEDEEDEEDKDDKKGKKTDICEDEDEGDQ 1250 1260 1270 1280 1290 1300 70 80 90 100 110 120 mKIAA0 AASSIPELERHIEKLSKRQLFFRKKLLHSSQMLRAVSLGQDRYRRHYWVLPYLAGIFVEG .:: . :::..::::::.: .:.::. .:. ::.. .:::::::.::.:: .:::::: mKIAA1 TAS-VEELEKQIEKLSKQQSQYRRKLFDASHSLRSMMFGQDRYRRRYWILPQCGGIFVEG 1310 1320 1330 1340 1350 130 140 150 160 170 180 mKIAA0 SEGSTVTEDEIKQETESLMEVVTSTPSSARASVKRELTGSNASTSPARSRGRPRKPKPGS :.. :. mKIAA1 MESGEGLEEI 1360 >>mKIAA0298 ( 208 res) mbg08362 (208 aa) initn: 224 init1: 129 opt: 251 Z-score: 154.8 bits: 37.7 E(): 0.0018 Smith-Waterman score: 251; 39.252% identity (40.777% ungapped) in 107 aa overlap (779-882:38-143) 750 760 770 780 790 800 mKIAA0 SRDSPAVPRYPEDGLSPPKRRRHSMRSHHSDLTFCEIILMEMESHDAAWPFLEPVNPRLV : :: ... . .. . :: :::.: :. mKIAA0 SLTQPEMEYDCENARYGHPGVRVLPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSP-LA 10 20 30 40 50 60 810 820 830 840 850 860 mKIAA0 SGYRRVIKNPMDFSTMRERLLR---GGYTSSEEFAADALLVFDNCQTFNEDDSEVGKAGH : ..:: :::.: .:..: . . ::. :: ..:. :.: :: :: ::::..::. mKIAA0 RHYYQIIKRPMDLSIIRRKLQKKDPAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGR 70 80 90 100 110 120 870 880 mKIAA0 VMRRFFESRWEEFYQGKQANL .. :::. .:.: : mKIAA0 CLEVFFEGWLKEIYPDKCFAQPQQEDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRR 130 140 150 160 170 180 >>mKIAA4005 ( 818 res) mfj27181 (818 aa) initn: 283 init1: 156 opt: 240 Z-score: 141.8 bits: 37.3 E(): 0.0094 Smith-Waterman score: 240; 32.121% identity (36.054% ungapped) in 165 aa overlap (719-875:315-469) 690 700 710 720 730 740 mKIAA0 CHRPKMEAVPEGDWFCAVCLSQVEEEYTQRPGFPKRGQKRKSSFPLTFPEGDSRRRMLSR :: : .: : .. .: . : mKIAA4 AAPPAQPLAKKKGVKRKADTTTPTPTAILAPGSP-------ASPPGSLEPKAARLPPMRR 290 300 310 320 330 750 760 770 780 790 800 mKIAA0 SRDSPAVPRYPEDGLSPPKRRRH--SMRSHHSD-LTFCEIILMEMES--HDA-AWPFLEP : : :. : : ....: : ... :. : :. :: :. : : : :::: .: mKIAA4 ESGRPIKP--PRKDL-PDSQQQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKP 340 350 360 370 380 390 810 820 830 840 850 860 mKIAA0 VNPRLVS--GYRRVIKNPMDFSTMRERLLRGGYTSSEEFAADALLVFDNCQTFNEDDSEV :. .. :. .::.:::.::..... : ...:::::. :.:.:: .: : .: mKIAA4 VDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDV 400 410 420 430 440 450 870 880 mKIAA0 GKAGHVMRRFFESRWEEFYQGKQANL .. .. :: :. mKIAA4 VAMARKLQDVFEFRYAKMPDEPLEPGPLPVSTALPPGLTKSSSESSSEESSSESSSEEEE 460 470 480 490 500 510 886 residues in 1 query sequences 1768131 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:17:24 2006 done: Mon Mar 27 10:17:25 2006 Scan time: 0.980 Display time: 0.130 Function used was FASTA [version 3.4t11 Apr 17, 2002]