FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0476.ptfa, 851 aa
 vs ./tmplib.26680 library

1768166 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.5495+/-0.00724; mu= 1.4257+/- 0.478
 mean_var=259.9074+/-64.296, 0's: 0 Z-trim: 3  B-trim: 153 in 1/35
 Lambda= 0.0796

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4082  ( 615 res)   mbg12536                   ( 615)  389   58 3.9e-09


>>mKIAA4082  ( 615 res)   mbg12536                        (615 aa)
 initn: 386 init1: 386 opt: 389  Z-score: 256.4  bits: 58.0 E(): 3.9e-09
Smith-Waterman score: 389;  54.310% identity (55.752% ungapped) in 116 aa overlap (140-254:3-116)

     110       120       130       140       150        160        
mKIAA0 KSATVPELWARCLLGHCYGLWFLCLPAYVRSVPSRVRALHTAYHVLRE-MENRKVVLPDE
                                     ::  ::  .. :    :  . . ..::  .
mKIAA4                             GNSVIPRVSIIRDARAEERLCLFTSQLVL--Q
                                           10        20          30

      170       180       190       200       210       220        
mKIAA0 VCYRVLMQLCSHYGQPVLSVRVMLEMRRAGIVPNTITYGYYNKAVLESKWPSGTPGGRLR
       ::::.:::::..: ::::.:::..::..::: ::.::::::::::::: ::: . .: . 
mKIAA4 VCYRILMQLCGQYDQPVLAVRVLFEMQKAGIDPNAITYGYYNKAVLESTWPSRSRSGYFL
               40        50        60        70        80        90

      230       240       250       260       270       280        
mKIAA0 WAKLRNVVLGAAQFRQPLKDRRQQQQQQQQQQQQKQQVAEQQKSGSSQTEPYLERPSPTR
       :.:.::::::.:::.. :: . .  :                                  
mKIAA4 WTKVRNVVLGVAQFKRALKKHPHLPQTALSGGRSDLGYNSLSKDNVRREGPSTEDIQGEK
              100       110       120       130       140       150




851 residues in 1 query   sequences
1768166 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:21:43 2006 done: Mon Mar 27 10:21:44 2006
 Scan time:  1.000 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]