FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1600.ptfa, 696 aa
 vs ./tmplib.26680 library

1768321 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.7633+/-0.0044; mu= 17.3896+/- 0.295
 mean_var=88.9253+/-20.404, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1360

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1759  ( 920 res)   mbg03108                   ( 920)  161   42 0.00033


>>mKIAA1759  ( 920 res)   mbg03108                        (920 aa)
 initn: 200 init1: 112 opt: 161  Z-score: 167.8  bits: 41.9 E(): 0.00033
Smith-Waterman score: 262;  27.823% identity (31.944% ungapped) in 248 aa overlap (205-445:234-456)

          180       190       200       210       220         230  
mKIAA1 NVTSLPEASAVRPNQDYNLVNSLLNLTRSPDGRIAVKACEGLMLLVSLPE--PAAAKCLA
                                     .: .. .: ..:.::..: .  :.... .:
mKIAA1 LLEFFLQPPPEPGAAPRLLLFSRLVPFVHREGTLGQQARDALLLLMALSDGSPTVGRYIA
           210       220       230       240       250       260   

            240       250        260       270       280       290 
mKIAA1 QSTCLCELLTGRLTSLYKALPQSVD-PLDIETVEAVNWGLDSYSHKEDASAFPGKRALIS
       . . .: .:.  :..::..::.... : :       .:      ..::  . :   ::  
mKIAA1 DHSYFCPVLATGLSALYSSLPRKIEVPGD-------DWHC---LRREDWIGVP---ALAL
           270       280       290                 300          310

             300       310       320       330       340       350 
mKIAA1 FLSWFDYCDQLIKEAQKTAAVALAKAIHERFFVGVMEPQLMQTSEMGILTSTALLHRIVR
       :.: ...:. .:. :.  .   :.  ::. :.: :: : : .::   ...::: :. ..:
mKIAA1 FMSSLEFCNAVIQVAHPLVQKQLVDYIHNGFLVPVMGPALHKTSVEEMIASTAYLELFLR
              320       330       340       350       360       370

             360       370         380       390       400         
mKIAA1 QVTSDVLLQEMVVFILGEQREPETLSE--ISRHPLRHRLIEHCDHISDEISIMTLRMFEH
       ...  .::. .. :.: .... .:. .  ..:     ::   :        ...: .:. 
mKIAA1 SISEPALLRTFLRFLLLHRHDTHTILDTLVARIGSNSRL---C--------MVSLSLFRT
              380       390       400          410                 

     410       420       430         440       450       460       
mKIAA1 LLQKPNEHILYNLVLRNLEERNYT--ENKPSCPEDKDVVENGLIAGAVDLEEDPLFTDIS
       ::.   : .: .:::: :   :..   .::.  .: :.                      
mKIAA1 LLNLSCEDVLLQLVLRYLVPCNHVMLSQKPAV-RDVDLYGRAADKFLSLIPRCCRHHAPS
     420       430       440       450        460       470        

       470       480       490       500       510       520       
mKIAA1 PDNTLPNQEWICSPRTSPDHPKNDGKTEVHKVVNSFLCLVPDDAKSSYHVEGTGYDTYLR
                                                                   
mKIAA1 PPRPEHASWARGPGSPSVDSSSVVTVPRPSTPSRLALFLRQQSLGGSESPGPVPRSPGLT
      480       490       500       510       520       530        




696 residues in 1 query   sequences
1768321 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:49:13 2006 done: Mon Mar 27 10:49:14 2006
 Scan time:  0.840 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]