FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1358.ptfa, 1038 aa
 vs ./tmplib.26680 library

1767979 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.1926+/-0.00459; mu= 22.3632+/- 0.308
 mean_var=102.1975+/-23.759, 0's: 0 Z-trim: 1  B-trim: 2 in 1/35
 Lambda= 0.1269

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0297  ( 1431 res)   mbf03436                  (1431)  211   50 2.3e-06


>>mKIAA0297  ( 1431 res)   mbf03436                       (1431 aa)
 initn: 230 init1: 109 opt: 211  Z-score: 206.5  bits: 50.3 E(): 2.3e-06
Smith-Waterman score: 242;  26.293% identity (29.048% ungapped) in 232 aa overlap (82-300:1201-1423)

              60        70        80        90       100       110 
mKIAA1 SKDDPKELPDPFNDLSVGGWEITEEPVGRLSVWAVSLQGKVWYREDVSHPNPEGSSWSLV
                                     ..::..  :.:. :  .:.  : :  :. .
mKIAA0 IISAQNVQCRPSTVQLPPDAEMRTYAACQDALWALDSLGQVFIRT-LSKSCPTGMHWTKL
             1180      1190      1200      1210       1220         

                 120       130       140         150       160     
mKIAA1 ETP--GEV--VQISCGPHDLIWATLWEGQALVREGVCRNNPK--GSYWSMVEPPGSENGI
       .    : :  ....:: .  :::   .: .  : :.   ::.     : :.::: .  :.
mKIAA0 DLSQLGTVRLTSLACGNQH-IWACDSRGGVYFRVGTQPLNPSLMLPAWIMIEPPVQLAGV
    1230      1240       1250      1260      1270      1280        

             170       180       190       200       210        220
mKIAA1 ----MHVSAGVSVVWAITKDRKVWFRRGVNSHNPCGTSWIEMVGEMTMVNVGLNDQ-VWG
           .: : . ...::. .  .:  : :.. . : ::.: : :  .   ...:. . ::.
mKIAA0 TLVSVHSSPNDQMLWALDSRWNVHVRTGITEEMPVGTDW-EHVPGLQACQLALSTRTVWA
     1290      1300      1310      1320       1330      1340       

              230       240       250       260         270        
mKIAA1 ISCEDRAVYFRQGVTPSELSGKTWKAIVVGRESDRSHSGSSS--SLLSAGCFFGDEVRGS
         : .  .  : :.: .. .:  :: :  :  :  . ..:.   .. :.::..   ..  
mKIAA0 -RCPNGDLARRYGITDKNPAGDYWKKIP-GSVSCFTVTSSDELWAVGSSGCLLQRLTKTF
       1350      1360      1370       1380      1390      1400     

      280       290       300       310       320       330        
mKIAA1 GTESAPSDTDASLEVERQGPEQPLPKEALDNSTNLKGSLSKGHETSGNTDHSTENACLTE
       .    :...    .:  . ::.                                      
mKIAA0 SHSHNPQNS----QVASSHPEELEEEWEVI                              
        1410          1420      1430                               




1038 residues in 1 query   sequences
1767979 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:42:10 2006 done: Mon Mar 27 10:42:11 2006
 Scan time:  0.970 Display time:  0.050

Function used was FASTA [version 3.4t11 Apr 17, 2002]