FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0461.ptfa, 853 aa vs ./tmplib.26680 library 1768164 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 8.7213+/-0.00726; mu= -0.3823+/- 0.485 mean_var=300.9114+/-69.883, 0's: 0 Z-trim: 19 B-trim: 0 in 0/36 Lambda= 0.0739 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1584 ( 746 res) mpm12072 ( 746) 698 88 3.3e-18 mKIAA1513 ( 621 res) mbg06025 ( 621) 316 48 5.3e-06 >>mKIAA1584 ( 746 res) mpm12072 (746 aa) initn: 901 init1: 566 opt: 698 Z-score: 419.3 bits: 88.5 E(): 3.3e-18 Smith-Waterman score: 876; 43.323% identity (51.590% ungapped) in 337 aa overlap (1-286:394-727) 10 20 30 mKIAA0 TKCKICEWAFESEPLFLQHMKDTHKPGEMP : ::::: .::.: ..:::::::::::::: mKIAA1 TTCQHCYRQYPNPFQLQCHIESTHTPHDFSTICKICELSFETEHMLLQHMKDTHKPGEMP 370 380 390 400 410 420 40 50 60 70 80 90 mKIAA0 YVCQVCQYRSSLYSEVDVHFRMIHEDTRHLLCPYCLKVFKNGNAFQQHYMRHQKRNVYHC :.:::::.:::..:.:..::: ::.:..::::.:::: . .. ...:::::::...:.: mKIAA1 YICQVCQFRSSIFSDVETHFRSSHENTKNLLCPFCLKVSRMATPYMNHYMRHQKKGIYRC 430 440 450 460 470 480 100 110 120 130 140 mKIAA0 NKCRLQFLFAKDKIEHKLQHHKTFRKPKQLEGLKPGTKVTIRASRG--QPRTVPVSSNDA ::::::: .:.: ::::.: .:: :::.:::: ::::: :::: : : :. :. mKIAA1 PKCRLQFLTSKEKTEHKLEH-RTFIKPKELEGLPPGTKVIIRASLGSSQSRASSPPSSTI 490 500 510 520 530 540 150 160 170 mKIAA0 PSGTLQ-----------------EAAALTSTDPLPVFLY-------------------PP :: .:: : :.:.: : : mKIAA1 PSTSLQLSVPKSKSTTTKNNSKVSANKATTTSPQTVATTTGKPSASKPGTGTTKSKAKPS 550 560 570 580 590 600 180 190 200 210 220 mKIAA0 VQRNIQKRAVRKMSV--------MGRQTCLECSFEIPDFPNHFPTYVHCSLCRYSTCCSR ... :. :.:. .: . :.:: .: :: .:: :...:..:.:.: :.. mKIAA1 YKQKRQRTRKNKFSIDLKNLRCHQGSHMCIECRSKIKDFSSHFSTHINCDFCKYTTNCNK 610 620 630 640 650 660 230 240 250 260 270 mKIAA0 AYANHMINNHVPRKSPKYLALFKNSVS---GIKLACTSCTF-ATSVG-DAMAKHLVFNPS :..::: ..: . : : : .::.. :: :.: .: : : . : : ::::: . mKIAA1 AFTNHM-SSHNDHPS-KQLYIFKKQSRARRGITLVCLKCDFLADTSGLDRMAKHLNQRKT 670 680 690 700 710 720 280 290 300 310 320 330 mKIAA0 HRSSNILPRGLSWMSHLRPGQASERVFDWSMKNTYLPPPLVPNKAATVKPVGVTPAEPQE : . .. mKIAA1 HTCQVVIENVTERAVTSESASDGLFK 730 740 >>mKIAA1513 ( 621 res) mbg06025 (621 aa) initn: 141 init1: 104 opt: 316 Z-score: 200.1 bits: 47.6 E(): 5.3e-06 Smith-Waterman score: 369; 24.402% identity (26.842% ungapped) in 418 aa overlap (331-720:129-536) 310 320 330 340 350 mKIAA0 ASERVFDWSMKNTYLPPPLVPNKAATVKPVGVTPAEPQE--LAGPVLQALPSPASTATPP ::: :: .: . : : :. :.. : mKIAA1 SLEFPFPKPDMINRLERDEECPNSDEWRLQGVTFAENEESDFRTPD-WASPTNATSHFPQ 100 110 120 130 140 150 360 370 380 390 400 410 mKIAA0 ATPTH------PQPSALPPSATEGTECLNVSEQEEGSPVTQDPEPASGGGGGSGVGKKEQ : . :: . : ::: . .. : .. : . :: . :. .. . mKIAA1 PQPFNSFGLRLPQDITELPEWTEGYP-FYMAMGFPGYDLSAD-DLASKFQFSRGMRRSYD 160 170 180 190 200 210 420 430 440 450 460 mKIAA0 LSVKKLRVVLFALCCNTEQAAEHFRNPQRRIRRWLRRFQASQGENLEGKYLSFEA----- . : : :: .: :. :::..: .. .: : :. . : .: .. .:.. mKIAA1 AGFK-LMVVEYAESTNNCQAAKQFGVLEKNVRDW-RKVKP-QLQNAHAMRRAFRGPKNGR 220 230 240 250 260 270 470 480 490 500 510 520 mKIAA0 ----EEKLAEWVLIQREQQLPVNEETLFQKATKIGRSL---EGGFKISYEWAVRFMLRHH ....::.: .. . :...:.. :: .:.. . : ::: : : :.: :. mKIAA1 FALVDQRVAEYVRYMQAKGDPITREAMQLKALEIAQEMNIPEKGFKASLGWCRRMMRRYD 280 290 300 310 320 330 530 540 550 560 570 mKIAA0 LTPHARRAVAHTLPKHVAENAGLFIEFVQRQI----HNQDLPLSMIVAIDEISLFLDTEV :. :. : .:.:.::. . :... ...: .... :: . :.. mKIAA1 LS--LRHKVP--VPQHLAEDLTEKLVTYQQSVLALRRTHDYEVAQMGNADETPICLEVPS 340 350 360 370 380 580 590 600 610 620 630 mKIAA0 -LSSDDRKENAL--QTVGTGEPWCDVVLAILADGTVLPTLVFFRGQANRFANVPDSILLE .. :.. :. . .: : . ..:..:::: :: ...:: .. :... .. mKIAA1 RVTVDNQGEKPILVKTPGREKLRITAMLGVLADGRKLPPYIILRGTYIPPGKFPSGMEIR 390 400 410 420 430 440 640 650 660 670 680 690 mKIAA0 AKDSGYSDDEIMELWSTRVWKKHT-ACQHSKSMLVMDCHRTHLSEEVLALLSASSTLPAV . :. ...:. : ::...: : ....::... : : .. : . . .: .. mKIAA1 CHRYGWMTEDLMQDWLEVVWRRRTGAVPRQRGMLILNGFRCHATDSVKSSMENMNTDMVI 450 460 470 480 490 500 700 710 720 730 740 750 mKIAA0 VPAGCSSKIQPLDVCIKRTVKNFLHKKWKEQAREMADAACDSDVLLQLVLVWLGEVLGVI .:.: .:..: ::: . . ... .. ... mKIAA1 IPGGLTSQLQVLDVVVYKPLNDSVRAQYSNWLLAGNLALSPTGNAKKPPLGLFLEWIMVA 510 520 530 540 550 560 853 residues in 1 query sequences 1768164 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:21:18 2006 done: Mon Mar 27 10:21:19 2006 Scan time: 0.950 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]