FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0280.ptfa, 166 aa
 vs ./tmplib.26680 library

1768851 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 9.0535+/-0.00671; mu= -11.3539+/- 0.446
 mean_var=244.2811+/-57.605, 0's: 0 Z-trim: 2  B-trim: 6 in 1/35
 Lambda= 0.0821

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4042  ( 261 res)   mfj56269                   ( 261)  718   97 7.7e-22


>>mKIAA4042  ( 261 res)   mfj56269                        (261 aa)
 initn: 796 init1: 504 opt: 718  Z-score: 484.4  bits: 96.6 E(): 7.7e-22
Smith-Waterman score: 718;  66.883% identity (68.212% ungapped) in 154 aa overlap (16-166:108-261)

                              10        20          30        40   
mKIAA0                RHLPPPVDTGTENRTYQASSAAFR--YTAGTPYKVPPTQSNTAPP
                                     : ... .:.  :: ::::::  . .. : :
mKIAA4 GVPYANAKGIGYPAGFPVGYAAAPAYSPNMYPGANPTFQTGYTPGTPYKVSCSPTSGAVP
        80        90       100       110       120       130       

            50        60        70         80        90       100  
mKIAA0 PYSPSPNPYQTAMYPIRSAYPQQNLYAQ-GAYYTQPVYAAQPHVIHHTTVVQPNSIPSAI
       ::: ::::::::.::.:::::::. ::: :.:::::.::: :::::::::::::..:...
mKIAA4 PYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMPATV
       140       150       160       170       180       190       

            110       120       130       140       150       160  
mKIAA0 YPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYV
       ::::.  :: .::.::::::::::::::::::. . : .. :::..::::: :::.::::
mKIAA4 YPAPIPPPRGSGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTYRAPGTPTYSYV
       200       210       220       230       240       250       

           
mKIAA0 PPHW
       ::.:
mKIAA4 PPQW
       260 




166 residues in 1 query   sequences
1768851 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:16:25 2006 done: Mon Mar 27 10:16:25 2006
 Scan time:  0.350 Display time:  0.000

Function used was FASTA [version 3.4t11 Apr 17, 2002]