# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg02827.fasta.nr -Q ../query/mKIAA0280.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0280, 166 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7916122 sequences Expectation_n fit: rho(ln(x))= 6.7654+/-0.000197; mu= -0.7941+/- 0.011 mean_var=116.0395+/-22.779, 0's: 47 Z-trim: 55 B-trim: 441 in 1/65 Lambda= 0.119062 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|149068762|gb|EDM18314.1| LOC361614 (predicted), ( 235) 1107 200.0 1.9e-49 gi|26339406|dbj|BAC33374.1| unnamed protein produc ( 235) 1107 200.0 1.9e-49 gi|149068761|gb|EDM18313.1| LOC361614 (predicted), ( 244) 1107 200.0 1.9e-49 gi|149719307|ref|XP_001498838.1| PREDICTED: hypoth ( 235) 1102 199.2 3.4e-49 gi|126327869|ref|XP_001363302.1| PREDICTED: hypoth ( 235) 1091 197.3 1.3e-48 gi|51703619|gb|AAH81257.1| MGC86305 protein [Xenop ( 235) 1061 192.1 4.5e-47 gi|52789425|gb|AAH83008.1| LOC494837 protein [Xeno ( 235) 1060 192.0 5.1e-47 gi|149616010|ref|XP_001505420.1| PREDICTED: hypoth ( 236) 1017 184.6 8.5e-45 gi|112418770|gb|AAI22117.1| Zgc:153007 [Danio reri ( 196) 862 157.9 7.6e-37 gi|149068763|gb|EDM18315.1| LOC361614 (predicted), ( 259) 841 154.4 1.2e-35 gi|50751925|ref|XP_422581.1| PREDICTED: hypothetic ( 195) 739 136.8 1.7e-30 gi|123885982|sp|Q0VFP2.1|F168B_XENTR RecName: Full ( 195) 726 134.5 8.2e-30 gi|83405780|gb|AAI10643.1| FAM168B protein [Homo s ( 195) 724 134.2 1e-29 gi|172045603|sp|A8E639.1|F168B_BOVIN RecName: Full ( 167) 720 133.5 1.5e-29 gi|81912903|sp|Q80XQ8.1|F168B_MOUSE RecName: Full= ( 194) 718 133.2 2.1e-29 gi|149046406|gb|EDL99299.1| rCG22336, isoform CRA_ ( 191) 715 132.6 3e-29 gi|74188330|dbj|BAE25820.1| unnamed protein produc ( 194) 715 132.6 3e-29 gi|148682515|gb|EDL14462.1| cDNA sequence BC043098 ( 206) 715 132.7 3.2e-29 gi|123885674|sp|Q0IHC4.1|F168B_XENLA RecName: Full ( 225) 699 129.9 2.3e-28 gi|194238794|ref|XP_001915297.1| PREDICTED: hypoth ( 195) 681 126.8 1.7e-27 gi|149759220|ref|XP_001504705.1| PREDICTED: simila ( 195) 673 125.4 4.5e-27 gi|148682514|gb|EDL14461.1| cDNA sequence BC043098 ( 140) 667 124.3 7e-27 gi|123905299|sp|Q08BY2.1|F168B_DANRE RecName: Full ( 195) 661 123.4 1.9e-26 gi|47218428|emb|CAG12699.1| unnamed protein produc ( 228) 598 112.6 3.8e-23 gi|47214864|emb|CAG00912.1| unnamed protein produc ( 217) 514 98.1 8.2e-19 gi|123187428|gb|ABM69272.1| tongue cancer chemothe ( 129) 297 60.7 8.9e-08 >>gi|149068762|gb|EDM18314.1| LOC361614 (predicted), iso (235 aa) initn: 1106 init1: 1106 opt: 1107 Z-score: 1044.1 bits: 200.0 E(): 1.9e-49 Smith-Waterman score: 1107; 98.788% identity (98.788% similar) in 165 aa overlap (2-166:73-235) 10 20 30 mKIAA0 RHLPPPVDTGTENRTYQASSAAFRYTAGTPY ::: ::::::::::::::::::::::::: gi|149 TSSPSYAPATLLMKQAWPQNSSSCGTEGTFHLP--VDTGTENRTYQASSAAFRYTAGTPY 50 60 70 80 90 100 40 50 60 70 80 90 mKIAA0 KVPPTQSNTAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KVPPTQSNTAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTT 110 120 130 140 150 160 100 110 120 130 140 150 mKIAA0 VVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 VVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTY 170 180 190 200 210 220 160 mKIAA0 RAQGTPAYSYVPPHW ::::::::::::::: gi|149 RAQGTPAYSYVPPHW 230 >>gi|26339406|dbj|BAC33374.1| unnamed protein product [M (235 aa) initn: 1106 init1: 1106 opt: 1107 Z-score: 1044.1 bits: 200.0 E(): 1.9e-49 Smith-Waterman score: 1107; 98.788% identity (98.788% similar) in 165 aa overlap (2-166:73-235) 10 20 30 mKIAA0 RHLPPPVDTGTENRTYQASSAAFRYTAGTPY ::: ::::::::::::::::::::::::: gi|263 TNSPSYAPATLLMKQAWPQNSSSCGTEGTFHLP--VDTGTENRTYQASSAAFRYTAGTPY 50 60 70 80 90 100 40 50 60 70 80 90 mKIAA0 KVPPTQSNTAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 KVPPTQSNTAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTT 110 120 130 140 150 160 100 110 120 130 140 150 mKIAA0 VVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 VVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTY 170 180 190 200 210 220 160 mKIAA0 RAQGTPAYSYVPPHW ::::::::::::::: gi|263 RAQGTPAYSYVPPHW 230 >>gi|149068761|gb|EDM18313.1| LOC361614 (predicted), iso (244 aa) initn: 1106 init1: 1106 opt: 1107 Z-score: 1043.9 bits: 200.0 E(): 1.9e-49 Smith-Waterman score: 1107; 98.788% identity (98.788% similar) in 165 aa overlap (2-166:82-244) 10 20 30 mKIAA0 RHLPPPVDTGTENRTYQASSAAFRYTAGTPY ::: ::::::::::::::::::::::::: gi|149 FQFLHSAYATLLMKQAWPQNSSSCGTEGTFHLP--VDTGTENRTYQASSAAFRYTAGTPY 60 70 80 90 100 40 50 60 70 80 90 mKIAA0 KVPPTQSNTAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KVPPTQSNTAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTT 110 120 130 140 150 160 100 110 120 130 140 150 mKIAA0 VVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 VVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTY 170 180 190 200 210 220 160 mKIAA0 RAQGTPAYSYVPPHW ::::::::::::::: gi|149 RAQGTPAYSYVPPHW 230 240 >>gi|149719307|ref|XP_001498838.1| PREDICTED: hypothetic (235 aa) initn: 1101 init1: 1101 opt: 1102 Z-score: 1039.5 bits: 199.2 E(): 3.4e-49 Smith-Waterman score: 1102; 98.182% identity (98.788% similar) in 165 aa overlap (2-166:73-235) 10 20 30 mKIAA0 RHLPPPVDTGTENRTYQASSAAFRYTAGTPY ::: ::::::::::::::::::::::::: gi|149 TNSPSYAPATLLMKQAWPQNSSSCGTEGTFHLP--VDTGTENRTYQASSAAFRYTAGTPY 50 60 70 80 90 100 40 50 60 70 80 90 mKIAA0 KVPPTQSNTAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KVPPTQSNTAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTT 110 120 130 140 150 160 100 110 120 130 140 150 mKIAA0 VVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTY :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::: gi|149 VVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTAPQHTAIGAHPVSMPTY 170 180 190 200 210 220 160 mKIAA0 RAQGTPAYSYVPPHW ::::::::::::::: gi|149 RAQGTPAYSYVPPHW 230 >>gi|126327869|ref|XP_001363302.1| PREDICTED: hypothetic (235 aa) initn: 1090 init1: 1090 opt: 1091 Z-score: 1029.2 bits: 197.3 E(): 1.3e-48 Smith-Waterman score: 1091; 96.970% identity (98.788% similar) in 165 aa overlap (2-166:73-235) 10 20 30 mKIAA0 RHLPPPVDTGTENRTYQASSAAFRYTAGTPY ::: ::::::::::::::::::::::::: gi|126 TNSPSYAPATLLMKQAWPQTSSSCATEGTFHLP--VDTGTENRTYQASSAAFRYTAGTPY 50 60 70 80 90 100 40 50 60 70 80 90 mKIAA0 KVPPTQSNTAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTT ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 KVPPTQSNNAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTT 110 120 130 140 150 160 100 110 120 130 140 150 mKIAA0 VVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTY ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: gi|126 VVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSVPTY 170 180 190 200 210 220 160 mKIAA0 RAQGTPAYSYVPPHW ::::::.:::::::: gi|126 RAQGTPTYSYVPPHW 230 >>gi|51703619|gb|AAH81257.1| MGC86305 protein [Xenopus l (235 aa) initn: 1060 init1: 1060 opt: 1061 Z-score: 1001.4 bits: 192.1 E(): 4.5e-47 Smith-Waterman score: 1061; 93.939% identity (98.182% similar) in 165 aa overlap (2-166:73-235) 10 20 30 mKIAA0 RHLPPPVDTGTENRTYQASSAAFRYTAGTPY ::: ::::::::::::::::::::::::: gi|517 TSSPGYAPATLLMKQAWPQTSSSCTNEGTFHLP--VDTGTENRTYQASSAAFRYTAGTPY 50 60 70 80 90 100 40 50 60 70 80 90 mKIAA0 KVPPTQSNTAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTT ::::.:::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|517 KVPPAQSNSAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTT 110 120 130 140 150 160 100 110 120 130 140 150 mKIAA0 VVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTY ::::::::::::::::::::::.::::::::::::::::::::::::::.::: ::.::: gi|517 VVQPNSIPSAIYPAPVAAPRTNSVAMGMVAGTTMAMSAGTLLTTPQHTALGAHAVSVPTY 170 180 190 200 210 220 160 mKIAA0 RAQGTPAYSYVPPHW ::::.:.:::::::: gi|517 RAQGAPTYSYVPPHW 230 >>gi|52789425|gb|AAH83008.1| LOC494837 protein [Xenopus (235 aa) initn: 1059 init1: 1059 opt: 1060 Z-score: 1000.5 bits: 192.0 E(): 5.1e-47 Smith-Waterman score: 1060; 93.333% identity (98.182% similar) in 165 aa overlap (2-166:73-235) 10 20 30 mKIAA0 RHLPPPVDTGTENRTYQASSAAFRYTAGTPY ::: ::::..::::::::::::::::::: gi|527 TSSQGYAPATLLMKQAWPQTSSSCTNEGTFHLP--VDTGADNRTYQASSAAFRYTAGTPY 50 60 70 80 90 100 40 50 60 70 80 90 mKIAA0 KVPPTQSNTAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTT ::::.:::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|527 KVPPAQSNSAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTT 110 120 130 140 150 160 100 110 120 130 140 150 mKIAA0 VVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTY :::::::::::::::::::::::::::::::::::::::::::::::::.::: ::.::: gi|527 VVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTALGAHAVSVPTY 170 180 190 200 210 220 160 mKIAA0 RAQGTPAYSYVPPHW ::::.:.:::::::: gi|527 RAQGAPTYSYVPPHW 230 >>gi|149616010|ref|XP_001505420.1| PREDICTED: hypothetic (236 aa) initn: 1016 init1: 1016 opt: 1017 Z-score: 960.5 bits: 184.6 E(): 8.5e-45 Smith-Waterman score: 1017; 89.091% identity (96.970% similar) in 165 aa overlap (2-166:74-236) 10 20 30 mKIAA0 RHLPPPVDTGTENRTYQASSAAFRYTAGTPY ::: :::.::::::::::.:::::::::: gi|149 GSPGYAPATLLMKQAWPPTSSSSCAPEGPFHLP--VDTATENRTYQASSTAFRYTAGTPY 50 60 70 80 90 100 40 50 60 70 80 90 mKIAA0 KVPPTQSNTAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTT :::::::... :::::::.:::.:::::::::::::::.::::::::::::::::::::: gi|149 KVPPTQSSSTAPPYSPSPSPYQAAMYPIRSAYPQQNLYTQGAYYTQPVYAAQPHVIHHTT 110 120 130 140 150 160 100 110 120 130 140 150 mKIAA0 VVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTY ::::::.:: .::::::: :::::.::::::::::::::::::::::::::.:::::::: gi|149 VVQPNSVPSPLYPAPVAAARTNGVTMGMVAGTTMAMSAGTLLTTPQHTAIGTHPVSMPTY 170 180 190 200 210 220 160 mKIAA0 RAQGTPAYSYVPPHW :.::::::::::::: gi|149 RTQGTPAYSYVPPHW 230 >>gi|112418770|gb|AAI22117.1| Zgc:153007 [Danio rerio] (196 aa) initn: 914 init1: 854 opt: 862 Z-score: 817.8 bits: 157.9 E(): 7.6e-37 Smith-Waterman score: 862; 81.761% identity (89.308% similar) in 159 aa overlap (4-160:30-187) 10 20 30 mKIAA0 RHLPPPVDTGTENRTYQASSAAFR--YTAGTPYK : . . : : ::..: .. :::::::: gi|112 MNPVYSPVQPGTPYGNPKNMAYTGYPGGYPTTAPAYTAN-LYQTGSPGYPPGYTAGTPYK 10 20 30 40 50 40 50 60 70 80 90 mKIAA0 VPPTQSNTAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTTV ::::::: :::::::::::: :::::::::::::::::::::.::::::::::::::::: gi|112 VPPTQSNGAPPPYSPSPNPYPTAMYPIRSAYPQQNLYAQGAYFTQPVYAAQPHVIHHTTV 60 70 80 90 100 110 100 110 120 130 140 150 mKIAA0 VQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYR ::::::::::::::: :::.::::::::::::::::::::::::::: ::::::..:::: gi|112 VQPNSIPSAIYPAPVPAPRSNGVAMGMVAGTTMAMSAGTLLTTPQHTQIGAHPVTVPTYR 120 130 140 150 160 170 160 mKIAA0 AQGTPAYSYVPPHW ::: ..: gi|112 PQGTLSWSLKRANFEAR 180 190 >>gi|149068763|gb|EDM18315.1| LOC361614 (predicted), iso (259 aa) initn: 840 init1: 840 opt: 841 Z-score: 796.6 bits: 154.4 E(): 1.2e-35 Smith-Waterman score: 841; 98.438% identity (98.438% similar) in 128 aa overlap (2-129:82-207) 10 20 30 mKIAA0 RHLPPPVDTGTENRTYQASSAAFRYTAGTPY :: :::::::::::::::::::::::::: gi|149 FQFLHSAYATLLMKQAWPQNSSSCGTEGTFHL--PVDTGTENRTYQASSAAFRYTAGTPY 60 70 80 90 100 40 50 60 70 80 90 mKIAA0 KVPPTQSNTAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KVPPTQSNTAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQGAYYTQPVYAAQPHVIHHTT 110 120 130 140 150 160 100 110 120 130 140 150 mKIAA0 VVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTY :::::::::::::::::::::::::::::::::::::: gi|149 VVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSADLESHCMQLLESYLPVLSGPLA 170 180 190 200 210 220 160 mKIAA0 RAQGTPAYSYVPPHW gi|149 APPLFARRDNGSARVTLCIFNGFDFYFWFL 230 240 250 166 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 19:43:09 2009 done: Fri Mar 13 19:47:21 2009 Total Scan time: 606.400 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]