FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4057.ptfa, 716 aa vs ./tmplib.26680 library 1768301 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.6054+/-0.00565; mu= 2.3847+/- 0.375 mean_var=178.4763+/-43.211, 0's: 0 Z-trim: 1 B-trim: 0 in 0/36 Lambda= 0.0960 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0346 ( 708 res) mpj01034 ( 708) 2139 309 1.2e-84 >>mKIAA0346 ( 708 res) mpj01034 (708 aa) initn: 2124 init1: 2124 opt: 2139 Z-score: 1612.0 bits: 308.8 E(): 1.2e-84 Smith-Waterman score: 2139; 62.708% identity (63.907% ungapped) in 480 aa overlap (241-716:197-671) 220 230 240 250 260 270 mKIAA4 INGEGHENLESSASVNVGLRPRSQIIPSMSVSIYSSSTEVLKACRSLGKNGLSNGHILLD ..: ...:..: .::. .:.. . mKIAA0 LKIRLIKVESGDKETFIASEVEERRLRMADLTISHCAADVMRA----SKNAKVKGKFRES 170 180 190 200 210 220 280 290 300 310 320 mKIAA4 ICPPP---RPPTSPYPPLPKEKLNPPTPSIYLENKRDAFFPPLHQFCINPKNPVTVIRGL : .: . ::.:::::::::::::.::::: : : ::: .:.::.:::::: mKIAA0 YLSPAQSVKPKINTEEKLPREKLNPPTPSIYLESKRDAFSPVLLQFCTDPRNPITVIRGL 230 240 250 260 270 280 330 340 350 360 370 380 mKIAA4 AGALKLDLGLFSTKTLVEANNEHIVEVRTQLLQPADENWDPSGTKKIWRYENKSSHTTIA ::.:.:.::::::::::::..:: ::::::. ::.::::: .::..:: :.. :::::: mKIAA0 AGSLRLNLGLFSTKTLVEASGEHTVEVRTQVQQPSDENWDLTGTRQIWPCESSRSHTTIA 290 300 310 320 330 340 390 400 410 420 430 440 mKIAA4 KYAQYQACSFQESLR-EENERRTQVKDYSDNESTCSDNSGRRQKAPFKTIKCGINIDLSD ::::::: ::::::. :: : . . .. :. . : .:. : . :: : :::::: mKIAA0 KYAQYQASSFQESLQQEERESEDEESEEPDSTTGTSPSSAPDPKN-HHIIKFGTNIDLSD 350 360 370 380 390 400 450 460 470 480 490 500 mKIAA4 NKKWKLQLHELTKLPAFVRVVSAGNLLSHVGYTILGMNSVQLCMKVPGSRIPGHQENNNF :.:: ::.:: :::::.::.:.::.:::::.::::::.::: ::::::: ::::::::: mKIAA0 AKRWKPQLQELLKLPAFMRVTSTGNMLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNF 410 420 430 440 450 460 510 520 530 540 550 560 mKIAA4 CSVNINIGPGDCEWFVVPEDYWGVLNDFCEKNNLNFLMSSWWPNLEDLYEANVPVYRFIQ :::::::::::::::.: : :: ... ::.......: .:::: :.::: .:.:::::.: mKIAA0 CSVNINIGPGDCEWFAVHEHYWETISAFCDRHGVDYLTGSWWPILDDLYASNIPVYRFVQ 470 480 490 500 510 520 570 580 590 600 610 620 mKIAA4 RPGDLVWINAGTVHWVQAIGWCNNITWNVGPLTAFQYKLAVERYEWNKLQSVKSVVPMVH :::::::::::::::::: ::::::.::::::::.::.::.::::::....:::.:::.: mKIAA0 RPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQYQLALERYEWNEVKNVKSIVPMIH 530 540 550 560 570 580 630 640 650 660 670 680 mKIAA4 LSWNMARNIKVSDPKLFEMIKYCLLKILKHCQTLREALVAAGKEVLWHGRINDEPAPYCS .:::.::..:.::: ::.:::.:::. .::::. ::.:: :::.. ..::..:::: ::. mKIAA0 VSWNVARTVKISDPDLFKMIKFCLLQSMKHCQVQRESLVRAGKKIAYQGRVKDEPAYYCN 590 600 610 620 630 640 690 700 710 mKIAA4 ICEVEVFNLLFVTNESNSQKTYIVHCQNCA :.:::::.::::.:..:..::.:::..:: mKIAA0 ECDVEVFNILFVTSENGSRNTYLVHCEGCARRRSAGLQGVVVLEQYRTEELAQAYDAFTL 650 660 670 680 690 700 716 residues in 1 query sequences 1768301 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:00:34 2006 done: Mon Mar 27 11:00:35 2006 Scan time: 0.870 Display time: 0.030 Function used was FASTA [version 3.4t11 Apr 17, 2002]