FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1039.ptfa, 336 aa vs ./tmplib.26680 library 1768681 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 8.4196+/-0.00547; mu= -3.6701+/- 0.362 mean_var=214.4846+/-50.326, 0's: 0 Z-trim: 7 B-trim: 2 in 1/35 Lambda= 0.0876 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0474 ( 726 res) mbe00481 ( 726) 765 109 9.1e-25 mKIAA1389 ( 1185 res) mbh01631 (1185) 218 40 0.00083 mKIAA0440 ( 1510 res) mbg05561 (1510) 220 40 0.00084 >>mKIAA0474 ( 726 res) mbe00481 (726 aa) initn: 622 init1: 443 opt: 765 Z-score: 537.0 bits: 108.8 E(): 9.1e-25 Smith-Waterman score: 765; 42.604% identity (44.582% ungapped) in 338 aa overlap (5-335:396-725) 10 20 30 mKIAA1 NCFIQVSVTAREDVPAFGPPLPSPPVFQKGAEFR .::::::.::: ::::::.: ::.:: ::. mKIAA0 PFVPDMIASNFLHAYVVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQ 370 380 390 400 410 420 40 50 60 70 80 90 mKIAA1 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGMGPEEDKFENG- ::::::: ::: :: :..::::::.:::::::..:..::: :.: :.:.: ..::.::: mKIAA0 EFLLTKLINAEYACYKAEKFAKLEERTRAALLETLYEELHIHSQSMMGLGSDDDKMENGS 430 440 450 460 470 480 100 110 120 130 140 150 mKIAA1 GHGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNLPGSLSGGIVHNSMEVTKTTFSPPVA : :::.:::::.:: ::.::..: :..: ... : ::... :. ...:. : mKIAA0 GGGGFFESFKRVIRSRSQSMDAMGLSNKK--PNTVSTSHSGSFTPNNPDLAKA------A 490 500 510 520 530 160 170 180 190 200 210 mKIAA1 AATAKNQSRSPIKRRSGLFPRLHS---GSEGQGDSRTRCDSASSTPKTPDGGHSSQEIKS . . ..:: ...:: : .: : :. . . . .: . ::::.:: ::: :: mKIAA0 GISLIVPGKSPTRKKSGPFGSRRSSAIGIENIQEVQEKRESPPAGQKTPDSGHVSQEPKS 540 550 560 570 580 590 220 230 240 250 260 mKIAA1 ETSSNPSSPEICPNKEK-PFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSG-SS :.::. ::::. .:.. . . ..::::::.:::.:.. : :... :.: : mKIAA0 ENSSTQSSPEMPTTKNRVESAAQRTEVLQGFSRSSSSASSFTSVVEETEGVDGDDTGLES 600 610 620 630 640 650 270 280 290 300 310 320 mKIAA1 QPSTTSPFKQEVFAYSP-SPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKL :. .: :.. : :: .: : . :... . : : .:: . ..:.... mKIAA0 VSSSGTPHKRDSFLYSTWLDDSVSTTSGGSSPGLTRSPHPDVGKSGDPACPEIKIQLETS 660 670 680 690 700 710 330 mKIAA1 SHASSSAGH . . . : mKIAA0 EQHTPQMGC 720 >>mKIAA1389 ( 1185 res) mbh01631 (1185 aa) initn: 249 init1: 216 opt: 218 Z-score: 160.7 bits: 39.9 E(): 0.00083 Smith-Waterman score: 218; 46.154% identity (46.753% ungapped) in 78 aa overlap (2-79:210-286) 10 20 30 mKIAA1 NCFIQVSVTAREDVPAFGPPLPSPPVFQKGA :. .:.:. .::: ::::.:. .: :.: mKIAA1 ALPFTPKNIRSHFQHVFVIVKVHNPCTENVCY-SVGVSRSKDVPPFGPPIPKGVTFPKSA 180 190 200 210 220 230 40 50 60 70 80 90 mKIAA1 EFREFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGMGPEEDKFE ::.:::.:. ::::: ::.:: . ::: : .: ... : . : mKIAA1 VFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAENFVTTATVDTSAKFSFITLG 240 250 260 270 280 290 100 110 120 130 140 150 mKIAA1 NGGHGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNLPGSLSGGIVHNSMEVTKTTFSPP mKIAA1 AKKKERVKPRKDAHLFSIGAIMWHVVARDFGQSADIECLLGISNEFIMLIEKDSKNVVFN 300 310 320 330 340 350 >>mKIAA0440 ( 1510 res) mbg05561 (1510 aa) initn: 236 init1: 203 opt: 220 Z-score: 160.6 bits: 40.3 E(): 0.00084 Smith-Waterman score: 220; 46.154% identity (46.753% ungapped) in 78 aa overlap (2-79:478-554) 10 20 30 mKIAA1 NCFIQVSVTAREDVPAFGPPLPSPPVFQKGA :. .:.:: .:::.::::.:. .: :. mKIAA0 AQPFSPKNIRSHFQHVFVIVRAHNPCTESVCY-SVAVTRSRDVPSFGPPIPKGVTFPKSN 450 460 470 480 490 500 40 50 60 70 80 90 mKIAA1 EFREFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGMGPEEDKFE ::.:::.:. ::::: ::.:: . ::: : .: .. :.: . mKIAA0 VFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAEKNVTNTPIDPSGKFPFISLA 510 520 530 540 550 560 100 110 120 130 140 150 mKIAA1 NGGHGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNLPGSLSGGIVHNSMEVTKTTFSPP mKIAA0 SKKKEKSKPYPGAELSSMGAIVWAVRAKDYNKAMEFDCLLGISSEFIVLIEQETKSVAFN 570 580 590 600 610 620 336 residues in 1 query sequences 1768681 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:34:35 2006 done: Mon Mar 27 10:34:36 2006 Scan time: 0.570 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]