# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg02540.fasta.nr -Q ../query/mKIAA1039.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1039, 336 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7916081 sequences Expectation_n fit: rho(ln(x))= 5.7505+/-0.000192; mu= 7.2057+/- 0.011 mean_var=92.8566+/-17.643, 0's: 50 Z-trim: 63 B-trim: 354 in 1/66 Lambda= 0.133097 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|74187048|dbj|BAE20542.1| unnamed protein produc ( 470) 2188 430.1 4.3e-118 gi|76825585|gb|AAI07389.1| Garnl4 protein [Mus mus ( 518) 2188 430.1 4.7e-118 gi|81862523|sp|Q5SVL6.1|RPGP2_MOUSE RecName: Full= ( 712) 2188 430.2 5.9e-118 gi|194217443|ref|XP_001502535.2| PREDICTED: simila ( 775) 2053 404.3 4e-110 gi|119610932|gb|EAW90526.1| GTPase activating Rap/ ( 674) 2036 401.0 3.5e-109 gi|119610934|gb|EAW90528.1| GTPase activating Rap/ ( 675) 2036 401.0 3.5e-109 gi|34530484|dbj|BAC85912.1| unnamed protein produc ( 711) 2036 401.0 3.6e-109 gi|51869679|emb|CAF31653.1| Rap1 GTPase activating ( 715) 2036 401.0 3.6e-109 gi|156086740|ref|NP_001093868.1| GTPase activating ( 715) 2036 401.0 3.6e-109 gi|162416269|sp|Q684P5.2|RPGP2_HUMAN RecName: Full ( 730) 2036 401.0 3.7e-109 gi|51869677|emb|CAF31652.1| Rap1 GTPase activating ( 730) 2036 401.0 3.7e-109 gi|50949940|emb|CAH10514.1| hypothetical protein [ ( 715) 2030 399.9 8.1e-109 gi|73967387|ref|XP_548324.2| PREDICTED: similar to ( 916) 2023 398.6 2.5e-108 gi|162416276|sp|Q5ZMV8.2|RPGP2_CHICK RecName: Full ( 730) 1896 374.1 4.6e-101 gi|53126175|emb|CAG30935.1| hypothetical protein [ ( 751) 1896 374.1 4.7e-101 gi|224076773|ref|XP_002197074.1| PREDICTED: GTPase ( 823) 1866 368.4 2.7e-99 gi|149637553|ref|XP_001510893.1| PREDICTED: hypoth (1134) 1785 353.0 1.7e-94 gi|148680824|gb|EDL12771.1| GTPase activating RANG ( 517) 1497 297.4 4.1e-78 gi|149053363|gb|EDM05180.1| GTPase activating RANG ( 410) 1478 293.7 4.3e-77 gi|189534018|ref|XP_001920828.1| PREDICTED: simila ( 707) 1155 231.8 3e-58 gi|189442497|gb|AAI67480.1| Zgc:175145 protein [Da ( 696) 1130 227.0 8.4e-57 gi|47208850|emb|CAF92942.1| unnamed protein produc ( 571) 813 166.1 1.5e-38 gi|115304761|gb|AAI23396.1| RAP1 GTPase activating ( 663) 790 161.7 3.6e-37 gi|32452014|gb|AAH54490.1| RAP1 GTPase activating ( 663) 779 159.6 1.6e-36 gi|215273877|sp|P47736.2|RPGP1_HUMAN RecName: Full ( 663) 779 159.6 1.6e-36 gi|190856|gb|AAA60252.1| GTPase activating protein ( 663) 779 159.6 1.6e-36 gi|55959690|emb|CAI16255.1| RAP1 GTPase activating ( 693) 779 159.6 1.6e-36 gi|119615390|gb|EAW94984.1| RAP1, GTPase activatin ( 694) 779 159.6 1.6e-36 gi|119615387|gb|EAW94981.1| RAP1, GTPase activatin ( 727) 779 159.7 1.7e-36 gi|21410877|gb|AAH30891.1| Rap1gap protein [Mus mu ( 423) 765 156.8 7.2e-36 gi|149024348|gb|EDL80845.1| RAP1, GTPase activatin ( 727) 766 157.2 9.5e-36 gi|149024349|gb|EDL80846.1| RAP1, GTPase activatin ( 693) 765 156.9 1e-35 gi|123229440|emb|CAM19421.1| Rap1 GTPase-activatin ( 694) 764 156.8 1.2e-35 gi|124487211|ref|NP_001074624.1| Rap1 GTPase-activ ( 727) 764 156.8 1.2e-35 gi|30354392|gb|AAH52065.1| Rap1gap protein [Mus mu ( 656) 725 149.3 2.1e-33 gi|123229439|emb|CAM19420.1| Rap1 GTPase-activatin ( 729) 725 149.3 2.2e-33 gi|169642403|gb|AAI60660.1| Zgc:175180 protein [Da ( 695) 577 120.9 7.7e-25 gi|168273006|dbj|BAG10342.1| Rap1 GTPase-activatin ( 681) 575 120.5 9.9e-25 gi|119615385|gb|EAW94979.1| RAP1, GTPase activatin ( 689) 575 120.5 1e-24 gi|108998965|ref|XP_001109771.1| PREDICTED: RAP1, (1242) 572 120.1 2.3e-24 gi|224043817|ref|XP_002195437.1| PREDICTED: RAP1 G ( 556) 566 118.7 2.8e-24 gi|55731989|emb|CAH92703.1| hypothetical protein [ ( 625) 566 118.7 3.1e-24 gi|123229442|emb|CAM19423.1| Rap1 GTPase-activatin ( 405) 560 117.4 4.9e-24 gi|119615389|gb|EAW94983.1| RAP1, GTPase activatin ( 617) 561 117.7 5.9e-24 gi|109475701|ref|XP_233609.4| PREDICTED: similar t ( 753) 561 117.8 6.9e-24 gi|55729452|emb|CAH91457.1| hypothetical protein [ ( 804) 561 117.8 7.3e-24 gi|71296783|gb|AAH35030.1| RAP1GAP protein [Homo s ( 692) 560 117.6 7.4e-24 gi|5650776|gb|AAD45946.1|AF151966_1 GTPase activat ( 556) 550 115.6 2.4e-23 gi|149517546|ref|XP_001517102.1| PREDICTED: simila ( 499) 532 112.1 2.4e-22 gi|149638122|ref|XP_001506554.1| PREDICTED: simila ( 779) 528 111.5 5.7e-22 >>gi|74187048|dbj|BAE20542.1| unnamed protein product [M (470 aa) initn: 2188 init1: 2188 opt: 2188 Z-score: 2276.4 bits: 430.1 E(): 4.3e-118 Smith-Waterman score: 2188; 99.699% identity (100.000% similar) in 332 aa overlap (5-336:139-470) 10 20 30 mKIAA1 NCFIQVSVTAREDVPAFGPPLPSPPVFQKGAEFR .::::::::::::::::::::::::::::: gi|741 PFVPDMIASNFLHAYIVVQADNPGTETPSYKVSVTAREDVPAFGPPLPSPPVFQKGAEFR 110 120 130 140 150 160 40 50 60 70 80 90 mKIAA1 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGMGPEEDKFENGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGMGPEEDKFENGG 170 180 190 200 210 220 100 110 120 130 140 150 mKIAA1 HGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNLPGSLSGGIVHNSMEVTKTTFSPPVAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 HGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNLPGSLSGGIVHNSMEVTKTTFSPPVAA 230 240 250 260 270 280 160 170 180 190 200 210 mKIAA1 ATAKNQSRSPIKRRSGLFPRLHSGSEGQGDSRTRCDSASSTPKTPDGGHSSQEIKSETSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 ATAKNQSRSPIKRRSGLFPRLHSGSEGQGDSRTRCDSASSTPKTPDGGHSSQEIKSETSS 290 300 310 320 330 340 220 230 240 250 260 270 mKIAA1 NPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSGSSQPSTTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 NPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSGSSQPSTTS 350 360 370 380 390 400 280 290 300 310 320 330 mKIAA1 PFKQEVFAYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 PFKQEVFAYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSSA 410 420 430 440 450 460 mKIAA1 GH :: gi|741 GH 470 >>gi|76825585|gb|AAI07389.1| Garnl4 protein [Mus musculu (518 aa) initn: 2188 init1: 2188 opt: 2188 Z-score: 2275.8 bits: 430.1 E(): 4.7e-118 Smith-Waterman score: 2188; 99.699% identity (100.000% similar) in 332 aa overlap (5-336:187-518) 10 20 30 mKIAA1 NCFIQVSVTAREDVPAFGPPLPSPPVFQKGAEFR .::::::::::::::::::::::::::::: gi|768 PFVPDMIASNFLHAYIVVQADNPGTETPSYKVSVTAREDVPAFGPPLPSPPVFQKGAEFR 160 170 180 190 200 210 40 50 60 70 80 90 mKIAA1 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGMGPEEDKFENGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGMGPEEDKFENGG 220 230 240 250 260 270 100 110 120 130 140 150 mKIAA1 HGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNLPGSLSGGIVHNSMEVTKTTFSPPVAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 HGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNLPGSLSGGIVHNSMEVTKTTFSPPVAA 280 290 300 310 320 330 160 170 180 190 200 210 mKIAA1 ATAKNQSRSPIKRRSGLFPRLHSGSEGQGDSRTRCDSASSTPKTPDGGHSSQEIKSETSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 ATAKNQSRSPIKRRSGLFPRLHSGSEGQGDSRTRCDSASSTPKTPDGGHSSQEIKSETSS 340 350 360 370 380 390 220 230 240 250 260 270 mKIAA1 NPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSGSSQPSTTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 NPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSGSSQPSTTS 400 410 420 430 440 450 280 290 300 310 320 330 mKIAA1 PFKQEVFAYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|768 PFKQEVFAYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSSA 460 470 480 490 500 510 mKIAA1 GH :: gi|768 GH >>gi|81862523|sp|Q5SVL6.1|RPGP2_MOUSE RecName: Full=Rap1 (712 aa) initn: 2188 init1: 2188 opt: 2188 Z-score: 2273.9 bits: 430.2 E(): 5.9e-118 Smith-Waterman score: 2188; 99.699% identity (100.000% similar) in 332 aa overlap (5-336:381-712) 10 20 30 mKIAA1 NCFIQVSVTAREDVPAFGPPLPSPPVFQKGAEFR .::::::::::::::::::::::::::::: gi|818 PFVPDMIASNFLHAYIVVQADNPGTETPSYKVSVTAREDVPAFGPPLPSPPVFQKGAEFR 360 370 380 390 400 410 40 50 60 70 80 90 mKIAA1 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGMGPEEDKFENGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGMGPEEDKFENGG 420 430 440 450 460 470 100 110 120 130 140 150 mKIAA1 HGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNLPGSLSGGIVHNSMEVTKTTFSPPVAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 HGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNLPGSLSGGIVHNSMEVTKTTFSPPVAA 480 490 500 510 520 530 160 170 180 190 200 210 mKIAA1 ATAKNQSRSPIKRRSGLFPRLHSGSEGQGDSRTRCDSASSTPKTPDGGHSSQEIKSETSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 ATAKNQSRSPIKRRSGLFPRLHSGSEGQGDSRTRCDSASSTPKTPDGGHSSQEIKSETSS 540 550 560 570 580 590 220 230 240 250 260 270 mKIAA1 NPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSGSSQPSTTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 NPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSGSSQPSTTS 600 610 620 630 640 650 280 290 300 310 320 330 mKIAA1 PFKQEVFAYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 PFKQEVFAYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSSA 660 670 680 690 700 710 mKIAA1 GH :: gi|818 GH >>gi|194217443|ref|XP_001502535.2| PREDICTED: similar to (775 aa) initn: 2047 init1: 2047 opt: 2053 Z-score: 2133.3 bits: 404.3 E(): 4e-110 Smith-Waterman score: 2053; 93.393% identity (98.198% similar) in 333 aa overlap (5-336:432-764) 10 20 30 mKIAA1 NCFIQVSVTAREDVPAFGPPLPSPPVFQKGAEFR .::::::::::::::::::::::::: ::: gi|194 PFVPDMIASNFLHAYIVVQAENAGTETPSYKVSVTAREDVPAFGPPLPSPPVFQKGPEFR 410 420 430 440 450 460 40 50 60 70 80 90 mKIAA1 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGMGPEEDKFENGG ::::::::::::::::::::::::::::::::::::::::.:::.:::.::::::::::: gi|194 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHAHTQAMLGLGPEEDKFENGG 470 480 490 500 510 520 100 110 120 130 140 150 mKIAA1 HGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNLPGSLSGGIVHNSMEVTKTTFSPPVAA :::::::::::::::::::::::.::.: :.:..:::::::: :::.::::::::::::. gi|194 HGGFLESFKRAIRVRSHSMETMVSSQKKQHSGGIPGSLSGGISHNSVEVTKTTFSPPVAV 530 540 550 560 570 580 160 170 180 190 200 210 mKIAA1 ATAKNQSRSPIKRRSGLFPRLHSGSEGQGDSRTRCDSASSTPKTPDGGHSSQEIKSETSS ::::::::::::::::::::::.::::::::::: :::::.::::::::::::::::::: gi|194 ATAKNQSRSPIKRRSGLFPRLHTGSEGQGDSRTRSDSASSNPKTPDGGHSSQEIKSETSS 590 600 610 620 630 640 220 230 240 250 260 270 mKIAA1 NPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSGSSQPSTTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 NPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSGSSQPSTTS 650 660 670 680 690 700 280 290 300 310 320 330 mKIAA1 PFKQEVFAYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSSA :::::::.:: ::::::::::::::::::::::::.::::::::::::::::::::.::: gi|194 PFKQEVFVYSQSPSSESPSLGAAATPIIMSRSPTDVKSRNSPRSNLKFRFDKLSHAGSSA 710 720 730 740 750 760 mKIAA1 -GH :: gi|194 LGHVPLWKEGDNPC 770 >>gi|119610932|gb|EAW90526.1| GTPase activating Rap/RanG (674 aa) initn: 1495 init1: 1495 opt: 2036 Z-score: 2116.5 bits: 401.0 E(): 3.5e-109 Smith-Waterman score: 2036; 92.470% identity (98.193% similar) in 332 aa overlap (5-336:344-674) 10 20 30 mKIAA1 NCFIQVSVTAREDVPAFGPPLPSPPVFQKGAEFR .::::::::::.:::::::::::::: ::: gi|119 PFVPDMIASNFLHAYIVVQVETPGTETPSYKVSVTAREDVPTFGPPLPSPPVFQKGPEFR 320 330 340 350 360 370 40 50 60 70 80 90 mKIAA1 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGMGPEEDKFENGG ::::::::::::::::::::::::::::::::::::::::.:::.:::.::::::::::: gi|119 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHAHTQAMLGLGPEEDKFENGG 380 390 400 410 420 430 100 110 120 130 140 150 mKIAA1 HGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNLPGSLSGGIVHNSMEVTKTTFSPPVAA ::::::::::::::::::::::::.:.: :.:..:::::::: :::::::::::::::.: gi|119 HGGFLESFKRAIRVRSHSMETMVGGQKKSHSGGIPGSLSGGISHNSMEVTKTTFSPPVVA 440 450 460 470 480 490 160 170 180 190 200 210 mKIAA1 ATAKNQSRSPIKRRSGLFPRLHSGSEGQGDSRTRCDSASSTPKTPDGGHSSQEIKSETSS ::.:::::::::::::::::::.:::::::::.::::.:::::::::::::::::::::: gi|119 ATVKNQSRSPIKRRSGLFPRLHTGSEGQGDSRARCDSTSSTPKTPDGGHSSQEIKSETSS 500 510 520 530 540 550 220 230 240 250 260 270 mKIAA1 NPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSGSSQPSTTS :::::::::::::::.:::::::: :::::::::: :::::::::::: :::.::::::: gi|119 NPSSPEICPNKEKPFMKLKENGRA-ISRSSSSTSSVSSTAGEGEAMEEGDSGGSQPSTTS 560 570 580 590 600 610 280 290 300 310 320 330 mKIAA1 PFKQEVFAYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSSA :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|119 PFKQEVFVYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSGA 620 630 640 650 660 670 mKIAA1 GH :: gi|119 GH >>gi|119610934|gb|EAW90528.1| GTPase activating Rap/RanG (675 aa) initn: 1495 init1: 1495 opt: 2036 Z-score: 2116.5 bits: 401.0 E(): 3.5e-109 Smith-Waterman score: 2036; 92.470% identity (98.193% similar) in 332 aa overlap (5-336:345-675) 10 20 30 mKIAA1 NCFIQVSVTAREDVPAFGPPLPSPPVFQKGAEFR .::::::::::.:::::::::::::: ::: gi|119 PFVPDMIASNFLHAYIVVQVETPGTETPSYKVSVTAREDVPTFGPPLPSPPVFQKGPEFR 320 330 340 350 360 370 40 50 60 70 80 90 mKIAA1 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGMGPEEDKFENGG ::::::::::::::::::::::::::::::::::::::::.:::.:::.::::::::::: gi|119 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHAHTQAMLGLGPEEDKFENGG 380 390 400 410 420 430 100 110 120 130 140 150 mKIAA1 HGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNLPGSLSGGIVHNSMEVTKTTFSPPVAA ::::::::::::::::::::::::.:.: :.:..:::::::: :::::::::::::::.: gi|119 HGGFLESFKRAIRVRSHSMETMVGGQKKSHSGGIPGSLSGGISHNSMEVTKTTFSPPVVA 440 450 460 470 480 490 160 170 180 190 200 210 mKIAA1 ATAKNQSRSPIKRRSGLFPRLHSGSEGQGDSRTRCDSASSTPKTPDGGHSSQEIKSETSS ::.:::::::::::::::::::.:::::::::.::::.:::::::::::::::::::::: gi|119 ATVKNQSRSPIKRRSGLFPRLHTGSEGQGDSRARCDSTSSTPKTPDGGHSSQEIKSETSS 500 510 520 530 540 550 220 230 240 250 260 270 mKIAA1 NPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSGSSQPSTTS :::::::::::::::.:::::::: :::::::::: :::::::::::: :::.::::::: gi|119 NPSSPEICPNKEKPFMKLKENGRA-ISRSSSSTSSVSSTAGEGEAMEEGDSGGSQPSTTS 560 570 580 590 600 610 280 290 300 310 320 330 mKIAA1 PFKQEVFAYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSSA :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|119 PFKQEVFVYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSGA 620 630 640 650 660 670 mKIAA1 GH :: gi|119 GH >>gi|34530484|dbj|BAC85912.1| unnamed protein product [H (711 aa) initn: 1495 init1: 1495 opt: 2036 Z-score: 2116.2 bits: 401.0 E(): 3.6e-109 Smith-Waterman score: 2036; 92.470% identity (98.193% similar) in 332 aa overlap (5-336:381-711) 10 20 30 mKIAA1 NCFIQVSVTAREDVPAFGPPLPSPPVFQKGAEFR .::::::::::.:::::::::::::: ::: gi|345 PFVPDMIASNFLHAYIVVQVETPGTETPSYKVSVTAREDVPTFGPPLPSPPVFQKGPEFR 360 370 380 390 400 410 40 50 60 70 80 90 mKIAA1 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGMGPEEDKFENGG ::::::::::::::::::::::::::::::::::::::::.:::.:::.::::::::::: gi|345 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHAHTQAMLGLGPEEDKFENGG 420 430 440 450 460 470 100 110 120 130 140 150 mKIAA1 HGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNLPGSLSGGIVHNSMEVTKTTFSPPVAA ::::::::::::::::::::::::.:.: :.:..:::::::: :::::::::::::::.: gi|345 HGGFLESFKRAIRVRSHSMETMVGGQKKSHSGGIPGSLSGGISHNSMEVTKTTFSPPVVA 480 490 500 510 520 530 160 170 180 190 200 210 mKIAA1 ATAKNQSRSPIKRRSGLFPRLHSGSEGQGDSRTRCDSASSTPKTPDGGHSSQEIKSETSS ::.:::::::::::::::::::.:::::::::.::::.:::::::::::::::::::::: gi|345 ATVKNQSRSPIKRRSGLFPRLHTGSEGQGDSRARCDSTSSTPKTPDGGHSSQEIKSETSS 540 550 560 570 580 590 220 230 240 250 260 270 mKIAA1 NPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSGSSQPSTTS :::::::::::::::.:::::::: :::::::::: :::::::::::: :::.::::::: gi|345 NPSSPEICPNKEKPFMKLKENGRA-ISRSSSSTSSVSSTAGEGEAMEEGDSGGSQPSTTS 600 610 620 630 640 280 290 300 310 320 330 mKIAA1 PFKQEVFAYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSSA :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|345 PFKQEVFVYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSGA 650 660 670 680 690 700 mKIAA1 GH :: gi|345 GH 710 >>gi|51869679|emb|CAF31653.1| Rap1 GTPase activating pro (715 aa) initn: 1495 init1: 1495 opt: 2036 Z-score: 2116.2 bits: 401.0 E(): 3.6e-109 Smith-Waterman score: 2036; 92.470% identity (98.193% similar) in 332 aa overlap (5-336:385-715) 10 20 30 mKIAA1 NCFIQVSVTAREDVPAFGPPLPSPPVFQKGAEFR .::::::::::.:::::::::::::: ::: gi|518 PFVPDMIASNFLHAYIVVQVETPGTETPSYKVSVTAREDVPTFGPPLPSPPVFQKGPEFR 360 370 380 390 400 410 40 50 60 70 80 90 mKIAA1 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGMGPEEDKFENGG ::::::::::::::::::::::::::::::::::::::::.:::.:::.::::::::::: gi|518 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHAHTQAMLGLGPEEDKFENGG 420 430 440 450 460 470 100 110 120 130 140 150 mKIAA1 HGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNLPGSLSGGIVHNSMEVTKTTFSPPVAA ::::::::::::::::::::::::.:.: :.:..:::::::: :::::::::::::::.: gi|518 HGGFLESFKRAIRVRSHSMETMVGGQKKSHSGGIPGSLSGGISHNSMEVTKTTFSPPVVA 480 490 500 510 520 530 160 170 180 190 200 210 mKIAA1 ATAKNQSRSPIKRRSGLFPRLHSGSEGQGDSRTRCDSASSTPKTPDGGHSSQEIKSETSS ::.:::::::::::::::::::.:::::::::.::::.:::::::::::::::::::::: gi|518 ATVKNQSRSPIKRRSGLFPRLHTGSEGQGDSRARCDSTSSTPKTPDGGHSSQEIKSETSS 540 550 560 570 580 590 220 230 240 250 260 270 mKIAA1 NPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSGSSQPSTTS :::::::::::::::.:::::::: :::::::::: :::::::::::: :::.::::::: gi|518 NPSSPEICPNKEKPFMKLKENGRA-ISRSSSSTSSVSSTAGEGEAMEEGDSGGSQPSTTS 600 610 620 630 640 650 280 290 300 310 320 330 mKIAA1 PFKQEVFAYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSSA :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|518 PFKQEVFVYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSGA 660 670 680 690 700 710 mKIAA1 GH :: gi|518 GH >>gi|156086740|ref|NP_001093868.1| GTPase activating Rap (715 aa) initn: 1495 init1: 1495 opt: 2036 Z-score: 2116.2 bits: 401.0 E(): 3.6e-109 Smith-Waterman score: 2036; 92.470% identity (98.193% similar) in 332 aa overlap (5-336:385-715) 10 20 30 mKIAA1 NCFIQVSVTAREDVPAFGPPLPSPPVFQKGAEFR .::::::::::.:::::::::::::: ::: gi|156 PFVPDMIASNFLHAYIVVQVETPGTETPSYKVSVTAREDVPTFGPPLPSPPVFQKGPEFR 360 370 380 390 400 410 40 50 60 70 80 90 mKIAA1 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGMGPEEDKFENGG ::::::::::::::::::::::::::::::::::::::::.:::.:::.::::::::::: gi|156 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHAHTQAMLGLGPEEDKFENGG 420 430 440 450 460 470 100 110 120 130 140 150 mKIAA1 HGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNLPGSLSGGIVHNSMEVTKTTFSPPVAA ::::::::::::::::::::::::.:.: :.:..:::::::: :::::::::::::::.: gi|156 HGGFLESFKRAIRVRSHSMETMVGGQKKSHSGGIPGSLSGGISHNSMEVTKTTFSPPVVA 480 490 500 510 520 530 160 170 180 190 200 210 mKIAA1 ATAKNQSRSPIKRRSGLFPRLHSGSEGQGDSRTRCDSASSTPKTPDGGHSSQEIKSETSS ::.:::::::::::::::::::.:::::::::.::::.:::::::::::::::::::::: gi|156 ATVKNQSRSPIKRRSGLFPRLHTGSEGQGDSRARCDSTSSTPKTPDGGHSSQEIKSETSS 540 550 560 570 580 590 220 230 240 250 260 270 mKIAA1 NPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSGSSQPSTTS :::::::::::::::.:::::::: :::::::::: :::::::::::: :::.::::::: gi|156 NPSSPEICPNKEKPFMKLKENGRA-ISRSSSSTSSVSSTAGEGEAMEEGDSGGSQPSTTS 600 610 620 630 640 650 280 290 300 310 320 330 mKIAA1 PFKQEVFAYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSSA :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|156 PFKQEVFVYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSGA 660 670 680 690 700 710 mKIAA1 GH :: gi|156 GH >>gi|162416269|sp|Q684P5.2|RPGP2_HUMAN RecName: Full=Rap (730 aa) initn: 1495 init1: 1495 opt: 2036 Z-score: 2116.0 bits: 401.0 E(): 3.7e-109 Smith-Waterman score: 2036; 92.470% identity (98.193% similar) in 332 aa overlap (5-336:400-730) 10 20 30 mKIAA1 NCFIQVSVTAREDVPAFGPPLPSPPVFQKGAEFR .::::::::::.:::::::::::::: ::: gi|162 PFVPDMIASNFLHAYIVVQVETPGTETPSYKVSVTAREDVPTFGPPLPSPPVFQKGPEFR 370 380 390 400 410 420 40 50 60 70 80 90 mKIAA1 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGMGPEEDKFENGG ::::::::::::::::::::::::::::::::::::::::.:::.:::.::::::::::: gi|162 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHAHTQAMLGLGPEEDKFENGG 430 440 450 460 470 480 100 110 120 130 140 150 mKIAA1 HGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNLPGSLSGGIVHNSMEVTKTTFSPPVAA ::::::::::::::::::::::::.:.: :.:..:::::::: :::::::::::::::.: gi|162 HGGFLESFKRAIRVRSHSMETMVGGQKKSHSGGIPGSLSGGISHNSMEVTKTTFSPPVVA 490 500 510 520 530 540 160 170 180 190 200 210 mKIAA1 ATAKNQSRSPIKRRSGLFPRLHSGSEGQGDSRTRCDSASSTPKTPDGGHSSQEIKSETSS ::.:::::::::::::::::::.:::::::::.::::.:::::::::::::::::::::: gi|162 ATVKNQSRSPIKRRSGLFPRLHTGSEGQGDSRARCDSTSSTPKTPDGGHSSQEIKSETSS 550 560 570 580 590 600 220 230 240 250 260 270 mKIAA1 NPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSGSSQPSTTS :::::::::::::::.:::::::: :::::::::: :::::::::::: :::.::::::: gi|162 NPSSPEICPNKEKPFMKLKENGRA-ISRSSSSTSSVSSTAGEGEAMEEGDSGGSQPSTTS 610 620 630 640 650 660 280 290 300 310 320 330 mKIAA1 PFKQEVFAYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSSA :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|162 PFKQEVFVYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSGA 670 680 690 700 710 720 mKIAA1 GH :: gi|162 GH 730 336 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Tue Mar 17 16:49:54 2009 done: Tue Mar 17 16:55:50 2009 Total Scan time: 819.230 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]