FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0579.ptfa, 233 aa
 vs ./tmplib.26680 library

1768784 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.3379+/-0.00483; mu= 15.3339+/- 0.324
 mean_var=105.7297+/-24.100, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1247

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1744  ( 1157 res)   mtg01952                  (1157)  402   83 6.3e-17


>>mKIAA1744  ( 1157 res)   mtg01952                       (1157 aa)
 initn: 382 init1: 221 opt: 402  Z-score: 396.3  bits: 82.9 E(): 6.3e-17
Smith-Waterman score: 402;  39.456% identity (40.278% ungapped) in 147 aa overlap (6-150:1002-1147)

                                        10        20        30     
mKIAA0                          PGCIVCTSCGCSGSCGSNGLTVSYANYFQHPFSGP
                                     : :::   :::.::     . :. .:. ::
mKIAA1 TAQSDSTSYISAVGNTNANGTIVPPQQMGPCGSCGRRCSCGTNGNLQLNSYYYPNPMPGP
             980       990      1000      1010      1020      1030 

          40        50        60          70        80        90   
mKIAA0 SVLTFPFLPFSPMCGNGYVSTQQYGGGSAFPVV--HTPYNGSVTPDPVLGGQSTFAVPPM
             :. .  .:...:..  . ..:. .:    .::: .... :::.:.:.....  :
mKIAA1 MYRLPSFFTLPSICNGSYLNQAHQSNGNQLPFFLPQTPYANGLVHDPVMGSQASYGMQQM
            1040      1050      1060      1070      1080      1090 

           100       110       120       130       140       150   
mKIAA0 QNFMAGTAGVYQAQGLVGSTNGSSHKKSGNLSCYNCGATGHRAQDCKQPSMDFNRQGKQV
        .: .    :: : ..:..:.::. ::.::.::::::..:: :::::: ::. :.::.  
mKIAA1 AGF-GRLYPVYPAPNVVANTSGSGPKKNGNVSCYNCGVSGHYAQDCKQSSMEANQQGNPT
             1100      1110      1120      1130      1140      1150

           160       170       180       190       200       210   
mKIAA0 RGSHVLLALWLVAPERRKQETCFVLFFKMIFIHTVFFFFFFKIYLFIIICTYTEAVFRCT
                                                                   
mKIAA1 NSQRTCF                                                     
                                                                   




233 residues in 1 query   sequences
1768784 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:23:33 2006 done: Mon Mar 27 10:23:34 2006
 Scan time:  0.440 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]