FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0560.ptfa, 1500 aa vs ./tmplib.26680 library 1767517 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.6322+/-0.00473; mu= 14.4044+/- 0.315 mean_var=110.2174+/-25.725, 0's: 0 Z-trim: 5 B-trim: 160 in 1/35 Lambda= 0.1222 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 41, opt: 29, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0083 ( 1078 res) mpm08053 (1078) 180 44 0.00024 mKIAA0056 ( 1505 res) mfj00763 (1505) 152 39 0.0094 >>mKIAA0083 ( 1078 res) mpm08053 (1078 aa) initn: 236 init1: 71 opt: 180 Z-score: 170.3 bits: 43.7 E(): 0.00024 Smith-Waterman score: 300; 27.895% identity (33.333% ungapped) in 380 aa overlap (1026-1369:721-1074) 1000 1010 1020 1030 1040 1050 mKIAA0 YFANAPQPIFKGRSYEEDMEIAEGCFRHIKKIFTQLEEFRASELLRS-GLDRSKYL--LV :. ....: :. :: .. .: : mKIAA0 LTSYTHSAVDNILLKLAKFKVGFLRLGQSHKVHPDIQKFTEEEICRSRSIASLAHLEELY 700 710 720 730 740 750 1060 1070 1080 1090 1100 mKIAA0 KEAKIIAMTC---THAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFS . :.: :: .: ..:. .: ...::.:: . . ::. :: mKIAA0 NSHPIVATTCMGINHPIFSRKT-------FDFCIVDEASQISQPVCLGPLF-------FS 760 770 780 790 1110 1120 1130 1140 1150 1160 mKIAA0 RLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNL : :....:::.::::.. : . .: .::: :. : .:.: .: : .. .: mKIAA0 R--RFVLVGDHQQLPPLVVNRE-ARALGMSESLFKRLERNESAVVQLTVQYRMNRKIMSL 800 810 820 830 840 850 1170 1180 1190 1200 1210 mKIAA0 YNWRYKNLGNLP--------HVQLLPEFSTANAGL-LY-DFQLINVEDFQGVGESE---- : . :.: : ::... : .: :: :.. . . :: : . mKIAA0 SN-KLTYAGKLECGSDRVANAVLALPNLKDARLSLQLYADYS--DSPWLAGVLEPDNPVC 860 870 880 890 900 910 1220 1230 1240 1250 1260 mKIAA0 -------PNPYFYQNLG-----EAEYVVALFMYMCLLGYPADKISILTTYNGQKHLIRDI : : .: : ::. .: : . : . :.... : : ..: :. mKIAA0 FLNTDKVPAPEQVENGGVSNVTEARLIVFLTSTFIKAGCSPSDIGVIAPYRQQLRIISDL 920 930 940 950 960 970 1270 1280 1290 1300 1310 mKIAA0 INRRCGNNPLIGRPNKVTTVDRFQGQQNDYILLSLVRTRAVGHL----RDVRRLVVAMSR . : .: .:.:::..::.... ::.:.::. : : .: ::: ::..: mKIAA0 LARSS-----VGMV-EVNTVDKYQGRDKSLILVSFVRSNEDGTLGELLKDWRRLNVALTR 980 990 1000 1010 1020 1320 1330 1340 1350 1360 1370 mKIAA0 ARLGLYIFARVSLFQNCFELTPAFSQLTARPLHLHIIPTEPFPTSRKNGERPPHEVQVIK :. : ... :: .. : :..:.:. : : . : :. :. mKIAA0 AKHKLILLGSVSSLKRFPPLGTLFDHLNAEQLILDLPSREHESLSHILGDCQRD 1030 1040 1050 1060 1070 1380 1390 1400 1410 1420 1430 mKIAA0 NMPQMANFVYNMYMHLIQTTHHYHQTFLQLPPAMVEEGEEGQSQETEMEAEEETVSAQGN >>mKIAA0056 ( 1505 res) mfj00763 (1505 aa) initn: 189 init1: 88 opt: 152 Z-score: 141.8 bits: 38.9 E(): 0.0094 Smith-Waterman score: 152; 28.226% identity (29.915% ungapped) in 124 aa overlap (1379-1499:1207-1326) 1350 1360 1370 1380 1390 1400 mKIAA0 RPLHLHIIPTEPFPTSRKNGERPPHEVQVIKN-MPQMANFVYNMYMHLIQTTHHYHQTFL :: .: . ... :. ...: . . :. mKIAA0 AQMKIISQVQKRNFIENIIPIIISLKTVLEKNKIPALRELM-NYLREVMQDYRDEINDFF 1180 1190 1200 1210 1220 1230 1410 1420 1430 1440 1450 1460 mKIAA0 QLPPAMVEEGEEGQSQETEMEAEEETVSAQGNLTPSPADASLSQETPAAQ--PDCSSQTE . .. : : ... .:. :.:.... ..: : .: : :...:.:: :: . mKIAA0 AVDKQLASELEYDMKKYNEQLAQEQALTEHANATKGPED---SDRVPSAQVAPDLEAVPA 1240 1250 1260 1270 1280 1290 1470 1480 1490 1500 mKIAA0 DTSAPCDIATAAEPVSAAAEAATPQDAESVPTETE ..:: :.:: :..::: :: ..:. ::... mKIAA0 LAAAPMAAAAAAAPMAAAAAAAGQDNADVPPTQSRPSAPRSNFTPTLPPISENGPLKIMS 1300 1310 1320 1330 1340 1350 mKIAA0 STRPMSLSTIAILNSVKKAVASKNRTRSLGALPFNVETGSPENPSSHESSLSLEKESDRT 1360 1370 1380 1390 1400 1410 1500 residues in 1 query sequences 1767517 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:23:08 2006 done: Mon Mar 27 10:23:09 2006 Scan time: 1.210 Display time: 0.130 Function used was FASTA [version 3.4t11 Apr 17, 2002]