FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0833.ptfa, 1523 aa vs ./tmplib.26680 library 1767494 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.9405+/-0.00656; mu= 10.6288+/- 0.438 mean_var=196.6034+/-45.861, 0's: 0 Z-trim: 1 B-trim: 43 in 1/35 Lambda= 0.0915 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 41, opt: 29, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0909 ( 1183 res) mbh01711 (1183) 710 107 1.8e-23 >>mKIAA0909 ( 1183 res) mbh01711 (1183 aa) initn: 2334 init1: 678 opt: 710 Z-score: 513.8 bits: 107.4 E(): 1.8e-23 Smith-Waterman score: 2697; 40.380% identity (58.318% ungapped) in 1528 aa overlap (1-1518:107-1174) 10 20 30 mKIAA0 TFHRRCYWLLQNPDIVLVHYLNVPAIEDCG :::::::::::::::::::::::::.:::: mKIAA0 GKTTREDHMKLKVQGMECLYGCYVHSSIVPTFHRRCYWLLQNPDIVLVHYLNVPALEDCG 80 90 100 110 120 130 40 50 60 70 80 90 mKIAA0 KPCGPILCSINTDKKEWAKWTKEELIGQLKPMFHGIKWTCSNGNSSSGFSVEQLVQQILD : :.::.:::..:..:: ::..:::.::::::::::::.:.:: :::::::::::: mKIAA0 KGCSPIFCSISSDRREWLKWSREELLGQLKPMFHGIKWSCGNGAEE--FSVEQLVQQILD 140 150 160 170 180 190 100 110 120 130 140 150 mKIAA0 SHQTKPQPRTHNCLCTGSLGAGSSVHHKCNSAKHRIISPKVEPRAGGYGGHSEVQHNDVS .: ::: :::: :::.:.::.:: . :::.:.::::::::::::: . .. ..:. mKIAA0 THPTKPAPRTHACLCSGGLGSGS-LTHKCSSTKHRIISPKVEPRALALAS---ISHSK-- 200 210 220 230 240 160 170 180 190 200 210 mKIAA0 EGKHEPSHGRSTSREKRNGKVAKPALLHQNSTEVSSTNQVEVPDTTQSSPVSISSGLNSD :: : :. :. ... :....:: : :::. mKIAA0 --PPEP-----------------PPLIAPLPPELPKAHTS--PSSSSSS--SSSSGFAEP 250 260 270 280 220 230 240 250 260 mKIAA0 PDMVDSPVVT-GVSSMAVASV--MGGLSQSATVFMSEVTNEAVYTMSPTAGPNHHLLSPD .. :: .. : :: . ... . :: : : . . ..: : : : mKIAA0 LEIRPSPPTSRGGSSRGGTAILLLTGLEQRAGGLTP------TRHLAPQAEPR-----PP 290 300 310 320 330 270 280 290 300 310 320 mKIAA0 ASQGLVLAVSSDGHKFAFPTTGSSDSLSMLPANVSEELVLSTTLDGGRKIPETAMNFDPD .: ..:. :: : : : : :::: mKIAA0 VSLAVVV--------------GSEPSAPPAP-------------------PSPA--FDPD 340 350 330 340 350 360 370 380 mKIAA0 CFLNNPKQGQTYGGG-GLKAEMVSTNIRHSP-PAERSFGFTSVLTKEIKTEDTSFEQQMA :::.:..::::::: :.. .. .. :.: :: . mKIAA0 RFLNSPQRGQTYGGGQGVNPDFPEAEGTHTPCPA------------------------LE 360 370 380 390 390 400 410 420 430 440 mKIAA0 KEAAYSSSAAAAASSSLTLTAAGSSLLPSGGGLSPSTTLEQMDFSAIDSNKDYASSFSQT :: .::: ::.: :. .. .:: mKIAA0 PAAALEPQAAAR-------------------GLAP-----QLGANGRRGNK--------- 400 410 420 450 460 470 480 490 500 mKIAA0 GHSPHIHQTPSPSFFLQDASKPLPLEQNTHSSLSESGAAFVMPTVKTEASSQTSSCSGHV ::.:: .. :. : . : :. .. :: .: mKIAA0 -------------FFIQDDDSGEELK----------GPGTVPPVPSSPPSSPSSPT---- 430 440 450 510 520 530 540 550 560 mKIAA0 ETRIESTSSLHLMQFQANFQAMAAEGEVTMETSQAAEGNEVLLKSGELQACGSEHYLQPE :. : .:..: :.:. mKIAA0 --------------------ALPPSG-------RATRG-EALF----------------- 460 470 570 580 590 600 610 620 mKIAA0 TNGVIRSAGGVPLLPSNVVQGLYPVAQPSLGNSSNMELSLDHFDISFSNQFSDLINDFIS :: : :.::..: :..: .: ::....:: mKIAA0 --------GG------------------SAGSSSELE----PFSLS---SFPDLMGELIS 480 490 630 640 650 660 670 680 mKIAA0 VEGGSGTIYGHQLVSGDSAALSQSEDGARAPFTQAEMCIPCCSPQQGSLQLSSAEGGPST : :: .: .:: :: :. mKIAA0 DE---------------------------AP------GVPAPAPQ-----LS-----PAL 500 510 690 700 710 720 730 740 mKIAA0 MAYMHVAEVVSAASAQGALGMLQQSGRVFMVTDYSPEWSYPEGGVKVLITGPWQEASNNY : .::.::::::::::::::::::: ::...: mKIAA0 NA----------------------------ITDFSPEWSYPEGGVKVLITGPWTEAAEHY 520 530 540 750 760 770 780 790 800 mKIAA0 SCLFDQISVPASLIQPGVLRCYCPAHDTGLVTLQVAFNNQIISNSVVFEYKARALPTLPS ::.::.:.:::::.::::::::::::..:::.:::: . .: ::.:::.:: . .::: mKIAA0 SCVFDHIAVPASLVQPGVLRCYCPAHEVGLVSLQVAGREGPLSASVLFEYRARRFLSLPS 550 560 570 580 590 600 810 820 830 840 850 860 mKIAA0 SQHDWLSLDDNQFRMSILERLEQMERRMAEMTGSQQHKQASGGGGSGSGSGSGAGGGQAQ .: :::::::.::::::::::::::.::::.... :.. :.: : : . mKIAA0 TQLDWLSLDDSQFRMSILERLEQMEKRMAEIAAA----------GQAPGQGPEAPPIQDE 610 620 630 640 650 870 880 890 900 910 920 mKIAA0 CASGAGTLGSCFESRVVVVCEKMMSRACWAKSKHLIHSKTFRGMTLLHLAAAQGYATLIQ ..: : ::.::::. :.:. :. : ..:::.. ::::.::::::::::: ::. mKIAA0 -GQGPG-----FEARVVVLVESMIPRSTWRGPERLIHGSPFRGMSLLHLAAAQGYARLIE 660 670 680 690 700 710 930 940 950 960 970 980 mKIAA0 TLIKWRTKHADSIDLELEVDPLNVDHFSCTPLMWACALGHLEAAVVLYKWDRRAISIPDS :: .::. .. :.::: ::::::::::::::::::::::::::::.:. :.:.:.::::: mKIAA0 TLSQWRSVETGSLDLEQEVDPLNVDHFSCTPLMWACALGHLEAAVLLFCWNRQALSIPDS 720 730 740 750 760 770 990 1000 1010 1020 1030 1040 mKIAA0 LGRLPLGIARSRGHVKLAECLEHLQRDEQAQLGQASRIHCAPSEEPTTDSWMAQWQREAM ::::::..:.:::::.::.:::.:::.: . :.: :. mKIAA0 LGRLPLSVAHSRGHVRLARCLEELQRQELS------------VEHPL-----------AL 780 790 800 1050 1060 1070 1080 1090 1100 mKIAA0 SPPEIPKGVTVIASTNPELRRPRSEPSNYYSTEGHKDYPAPKKHKLNPESFQARQEKLLC ::: :..:. : .. .:.. :. .:. . mKIAA0 SPP----------SSSPDT--------------GLSSASSPSE--LSDGTFS------VT 810 820 830 1110 1120 1130 1140 1150 1160 mKIAA0 TALSLEQPNIRKQSPRSKQPSPETISPSEGVREYSREAAPPTPETAASQASASQPVVKWS .: : :. :: :.: : . : : : .: : . : . mKIAA0 SAYS-SAPD---GSP---PPAPPLAS------DISMEMIP-------GQLSCGAPETPLL 840 850 860 870 1170 1180 1190 1200 1210 1220 mKIAA0 AKDLYIGVSTVQVTGNPKGTSVVKDAAPSQVRPREPMSVLMLANREVVNTEMGAYRDRTE : : .... :. ::: : :.. . :: : mKIAA0 LMD-YEATNS-------------KEPAPSPCGP--PLA-----------QDNGAA---PE 880 890 900 1230 1240 1250 1260 1270 1280 mKIAA0 HEDCPQPMDDIQVNMMTLAEHIIEATPDRIKQENFVPME---SSALERTDPATISSTMSW : : .: : :.:..::..::.:::.:::.:.: . .: :.: . .: :::: mKIAA0 DADSPPAVDVIPVDMISLAKQIIDATPERIKREDFSEFPDAGASPREHTGTVGLSETMSW 910 920 930 940 950 960 1290 1300 1310 1320 1330 1340 mKIAA0 LASYLADADRLPSAAHIRSAYTEPLTPSSNASLSPAGSPVSEVAFEKPSL--PSAADWSE ::::: ..:..::.: : ::. ::. : : : .:.: mKIAA0 LASYLENVDHFPSSA-----------------------PPSELPFERGRLAIPPAPSWAE 970 980 990 1000 1350 1360 1370 1380 1390 1400 mKIAA0 FLSASTSEKVESELAQLTLSDHEQRELYEAARLVQTAFRKYKGRPLREQQEVAAAVIQRC ::::::: :.::..: ::::::::::::::::..:::::::::: :.::::::::::::: mKIAA0 FLSASTSGKMESDFALLTLSDHEQRELYEAARVIQTAFRKYKGRRLKEQQEVAAAVIQRC 1010 1020 1030 1040 1050 1060 1410 1420 1430 1440 1450 1460 mKIAA0 YRKYKQLTWIALKYALYKKMTQAAILIQSKFRSYYEQKRFQQSRRAAVLIQNFYRSYKKC :::::::::::::.:::::::::::::::::::::::::::::::::::::. ::::.. mKIAA0 YRKYKQLTWIALKFALYKKMTQAAILIQSKFRSYYEQKRFQQSRRAAVLIQQHYRSYRR- 1070 1080 1090 1100 1110 1120 1470 1480 1490 1500 1510 1520 mKIAA0 GRRRPARRTAVIVQQKLRSSLLTKKQDQAARKIMRFLRRCRHSPLVDHRLYKRSERIEKG : : .: . . . ....::::::::::::::::::::: : :.....: mKIAA0 -RPGPPHRPSGPLPARNKGTFLTKKQDQAARKIMRFLRRCRHR----MRELKQNQELEGL 1130 1140 1150 1160 1170 mKIAA0 QGT mKIAA0 PQPGLAT 1180 1523 residues in 1 query sequences 1767494 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:29:51 2006 done: Mon Mar 27 10:29:53 2006 Scan time: 1.300 Display time: 0.170 Function used was FASTA [version 3.4t11 Apr 17, 2002]