FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0837.ptfa, 376 aa
 vs ./tmplib.26680 library

1768641 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.0592+/-0.00377; mu= 16.8879+/- 0.253
 mean_var=68.3301+/-15.520, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1552

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0631  ( 724 res)   mbj00361                   ( 724)  354   88 1.5e-18


>>mKIAA0631  ( 724 res)   mbj00361                        (724 aa)
 initn: 285 init1: 239 opt: 354  Z-score: 425.5  bits: 88.4 E(): 1.5e-18
Smith-Waterman score: 402;  27.676% identity (30.460% ungapped) in 383 aa overlap (17-372:345-719)

                             10        20          30        40    
mKIAA0               AIPPSYLLPQSVVYCHGGRVGFFQGDIR--LLSDDMKALRPTIFPV
                                     :..: : . :     : . .. ..::    
mKIAA0 AEVQQEVVVSYLPLSHIAAQIYDLWTGIQWGAQVCFADPDALKGTLVNTLREVEPTSHMG
          320       330       340       350       360       370    

           50        60          70           80          90       
mKIAA0 VPRLLNRMYDKIFHQADTS--LKRWLLEFAAK---RKQAEVRSGIIR--NNSIWDELFFN
       :::. ......: . :  :  ..: .: .: .   ...    :. ..  .. . : : . 
mKIAA0 VPRVWEKIMERIQEVAAQSGFIRRKMLLWAMSVTLEQNLTCPSNDLKPFTSRLADYLVLA
          380       390       400       410       420       430    

       100        110       120       130       140       150      
mKIAA0 KIQASLG-GHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGDWTS
       ... .:: .. .    :::: .  .  :.  .:. ..: ::: .: :.   ...: ..  
mKIAA0 RVRQALGFAKCQKNFYGAAPMTAETQRFF-LGLNIRLYAGYGLSESTGPHFMSSPYNYRL
          440       450       460        470       480       490   

        160       170       180       190       200       210      
mKIAA0 GHVGAPLPCNHIKLVDAEELNYWTCKGEGEICVKGPNVFKGYLKDEDRTKEALDSDGWLH
          :  .:  ..:::. .        : ::::. : ..: :::. ::.: ::.::.::::
mKIAA0 YSSGRVVPGCRVKLVNQDA------DGIGEICLWGRTIFMGYLNMEDKTCEAIDSEGWLH
           500       510             520       530       540       

        220       230       240       250       260        270     
mKIAA0 TGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPV-AQIYVHGDS---L
       :::.:.   .: : :  : :...  : :: : :  ::.      :. .. .. ::.   :
mKIAA0 TGDMGRLDADGFLYITGRLKELIITAGGENVPPVPIEEAVKMELPIISSAMLIGDQRKFL
       550       560       570       580       590       600       

            280                 290        300         310         
mKIAA0 KAFLVGIVVPDPEVM-PS---------WAQKKGIEG-TYQELCMKKE--LKKAILDDMVM
       . .:.   . :::.  :.         . :. : .. : .:.  ...  . .:: . .  
mKIAA0 SMLLTLKCTLDPETSEPTDSLTEQAVEFCQRVGSKASTVSEIVGQRDEAVYQAIHEGIQR
       610       620       630       640       650       660       

     320       330       340       350       360       370       
mKIAA0 LGKESGLHSFEQVKAIYIHCDMFSVQNGLLTPTLKAKRPELREYFKKQIEELYLVSV 
       .. ... . ..  :   .. : ::...: : ::.: ::  . : .:  :. .:     
mKIAA0 VNANAAARPYHIQKWAILQRD-FSISGGELGPTMKLKRLTVLEKYKDIIDSFYQEQKQ
       670       680        690       700       710       720    




376 residues in 1 query   sequences
1768641 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:29:58 2006 done: Mon Mar 27 10:29:58 2006
 Scan time:  0.600 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]