FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1743.ptfa, 811 aa
 vs ./tmplib.26680 library

1768206 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 13.0432+/-0.00946; mu= -21.7946+/- 0.626
 mean_var=517.3764+/-124.905, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.0564

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00087  ( 1054 res)   msh08123                  (1054) 1109  105 4.1e-23


>>mFLJ00087  ( 1054 res)   msh08123                       (1054 aa)
 initn: 1156 init1: 1109 opt: 1109  Z-score: 507.2  bits: 105.1 E(): 4.1e-23
Smith-Waterman score: 1111;  47.354% identity (48.907% ungapped) in 378 aa overlap (1-378:454-819)

                                             10        20        30
mKIAA1                               IRIKARYQTVSILPMEMYKEFAEHITNHYL
                                     .: . : . . .:: : :::.:: .: :: 
mFLJ00 LELDEVSIPRAPAAGLERWFPVLGAPAGAVLRARIRVRCLRVLPSERYKELAEFLTFHYA
           430       440       450       460       470       480   

               40        50        60        70        80        90
mKIAA1 GLCAALEPILSAKTKEEMASALVHILQSTGKVKDFLTDLMMSEVDRCGDNEHLIFRENTL
        ::.:::: :::..:::.:.:.:..:..::... ..:::  .:. :::  : :.::::::
mFLJ00 RLCGALEPALSAQAKEELAAAMVRVLRATGRAQALVTDLGTAELARCGGREALLFRENTL
           490       500       510       520       530       540   

              100       110       120       130       140       150
mKIAA1 ATKAIEEYLKLVGQKYLQDALGEFIKALYESDENCEVDPSKCSSADLPEHQGNLKMCCEL
       :::::.::.:::.:.::::.::. .. :  : :.:::::::: . .::.::. :.  :: 
mFLJ00 ATKAIDEYMKLVAQEYLQDTLGQVVRCLCASTEDCEVDPSKCPTPELPKHQARLRDSCEE
           550       560       570       580       590       600   

              160       170       180       190       200       210
mKIAA1 AFCKIINSYCVFPRELKEVFASWRQECSSRGRPDISERLISASLFLRFLCPAIMSPSLFN
       .: .::.::  :: ::  ::.:::. :..::   .. ::. ::::::.:::::..::::.
mFLJ00 VFENIIHSYNCFPAELGSVFSSWREACKARGSEALGPRLVCASLFLRLLCPAILAPSLFG
           610       620       630       640       650       660   

              220       230       240       250       260       270
mKIAA1 LLQEYPDDRTARTLTLIAKVTQNLANFAKFGSKEEYMSFMNQFLEHEWTNMQRFLLEISN
       :  :.:    :::::::::: ::::: : :: :: ::.:::.::: .   ::.:: ....
mFLJ00 LAPEHPAPGPARTLTLIAKVIQNLANCAPFGEKEAYMAFMNSFLEDHGPAMQHFLDQVAT
           670       680       690       700       710       720   

              280       290       300       310       320       330
mKIAA1 PETLSNTAGFEGYIDLGRELSSLHSLLWEAVSQLDQSVVSKLGPLPRILRDVHTALSTPG
        .. .. .:..:  ::. .:. ::  :    ..:::.. ..: ::: ::: .. .  .: 
mFLJ00 VDADTTPSGYQGSGDLALQLAVLHVQLCTIFAELDQKTQDSLEPLPTILRAIEEGRPVPV
           730       740       750       760       770       780   

              340       350       360       370       380       390
mKIAA1 SGQLPGTNDLASTPGSGSSSVSAGLQKMVIENDLSGLIDFTRLPSPTPENKDLFFVTRSS
       :  .:        :      .:. .:.  . ..  :..    ::. ::            
mFLJ00 S--VP-----MRLP-----RISTQVQSSFFSGEKPGFLAPRDLPKHTPLISKSQSLRSFQ
                  790            800       810       820       830 

              400       410       420       430       440       450
mKIAA1 GVQPSPARSSSYSEANEPDLQMANGSKSLSMVDLQDARTLDGEAGSPVGPDALPADGQVP
                                                                   
mFLJ00 GAGSWASRRPDEERPQRRPRPVLRTQSVPARRPTHRRPSAGSKPRPKGSLRMGPAPCGRA
             840       850       860       870       880       890 




811 residues in 1 query   sequences
1768206 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:52:11 2006 done: Mon Mar 27 10:52:12 2006
 Scan time:  0.950 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]