FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0978.ptfa, 1579 aa vs ./tmplib.26680 library 1767438 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 9.7381+/-0.00796; mu= -1.3418+/- 0.529 mean_var=321.7032+/-76.072, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.0715 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 41, opt: 29, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1685 ( 1060 res) mbg06521 (1060) 299 45 7.3e-05 >>mKIAA1685 ( 1060 res) mbg06521 (1060 aa) initn: 681 init1: 258 opt: 299 Z-score: 179.6 bits: 45.5 E(): 7.3e-05 Smith-Waterman score: 634; 25.422% identity (31.759% ungapped) in 1243 aa overlap (402-1579:1-1060) 380 390 400 410 420 430 mKIAA0 ALNNEFFTHAAQSWRERLADGEFTHEMQVRLRQEMEKEKKVEQWKEKFFEDYYGQKLGLT .:::.::::::: :::.:::.::::. ::. mKIAA1 IRQEIEKEKKVELWKEQFFENYYGQSSGLS 10 20 30 440 450 460 470 mKIAA0 KEESLQQKEVQEEAKVKSGLCVSGESVRPQRG---------------------PNTRQRD :.: . . . :.:. . .:. :... :. :.. mKIAA1 LEDSQKLTASSSDPKAKKTPAEQPKSILPSEASPVRIVPVVPQSECKEEAVQIPSPSQKE 40 50 60 70 80 90 480 490 500 510 mKIAA0 GHFKKRSRPD-------LRTRSRRN--IYKK--QEPEQAGV--AKDASAAPDVSLSKDTK . . ..::: : . : : : : . :.. :. : .. : . : ... mKIAA1 EN-QDEARPDSKSPEPVLASASNTNELITMKPIKSPKDEGLLEQKPVACAEQESEKENHV 100 110 120 130 140 520 530 540 550 560 570 mKIAA0 TDLAGVNSTPGPDVSSATSGQEGPKCPSEPVASQIQAERDNLACASASPD-RIPTLPQDT : . :.. . .. . . .. ..:. . . :: . : .:: ..: : . mKIAA1 TTTSRNNKSENQEALAISPSKSKNAGLQKPIIKPV-AEASPL-----NPDMKMP--PATV 150 160 170 180 190 200 580 590 600 610 620 mKIAA0 VDQETKDQKRKS--FEQEASASFPEKKPRL-EDRQSFRNTIESVHTEKPQPTKEEP---- .:: .. :::: ..::..:. ::.::. :.:: .. .::: .. mKIAA1 TDQIQESLKRKSSLTDEEATSSW-EKRPRITENRQH-----QQPFQVSPQPFLNRGDRVQ 210 220 230 240 250 630 640 650 660 670 680 mKIAA0 --KVPPIRIQLSRIKPPWVAKGRPTYQICPRI-VPITESSCRGWTGARTLADIKARA--L ::::..: .:::.: . : :. :: ::. .: :::::::::::.: . mKIAA1 VRKVPPLKIPVSRISPMLFS----TSQVSPRARFPISITSPYR-TGARTLADIKAKAQLV 260 270 280 290 300 310 690 700 710 720 730 740 mKIAA0 QARGARGYHCNRETATTAIGG---GGGPGGGGSGAIDEGGGRDSSSGDGSEACGHPEPRG .:. : . .:....:: : ::::: : ::: : ..: :: : . : . mKIAA1 KAQKAAAAAAAAAAAAASVGGTIPGLGPGGGQSPR--EGGERKIAGG-GS-AGSDPVSTN 320 330 340 350 360 750 760 770 780 790 mKIAA0 APSTSGESASDLQR--TQLLPPC-PLNGEHTPAEAAMPRARREDSASLRKEESCLLKRVP . . . : :. .: :. : :: : . :..: : ..:.:.. : :: mKIAA1 GKGPTLELAGTGSRGGTRELLPCGPQPETNMPGQAQPPGI---SGAQLQQTSS-----VP 370 380 390 400 410 800 810 820 830 840 850 mKIAA0 -GVLTSGLEDASQPPIAPTGDQPCQALPPLSSQTPVAEMLTEQPKLLLDDRTEC--ESSR :. .:: .. :. . . : : . : .: .: : : :. : :.. mKIAA1 TGLASSGA--CTSVPLPAHIEISNSEKPNLHKATATAA----SPCHLQDPRS-CRLEKAL 420 430 440 450 460 470 860 870 880 890 900 910 mKIAA0 EDQGPTIPSESSSGRFPLGDLLGGGSDQAFDNMKEPVSMTPTFISELSLANYLQDRPDDD :: . : .:. : ..: : .: .: . : :. .::. : : mKIAA1 SPTGPPLISGASTVYF-VAD--GTVEPKAGSNKNAP---KPS-----ALAKTTAPAPLDM 480 490 500 510 520 920 930 940 950 960 970 mKIAA0 GLGLGATGLLIRESSRQEALTEAFASGSPTS-WVPILSNYEVIKTSDPESRENIPCPEPQ . .:. : . : . : . ....:.: .: :. .:: : . :. : . mKIAA1 TSSPVTTASLEKLPVPQISGTATSTGSAPSSSTLPAASS---LKT--PGTSANMNGPISR 530 540 550 560 570 980 990 1000 1010 1020 1030 mKIAA0 DEKEWERAVPLIAATESVPQPESCISHWTPPPAAVGSTGSDSEQVDLERLEMNGISEAPS . ::. :. . . . . : : : . . : : : .::. :. mKIAA1 TSSSIPANNPLV--TQLLQGKDVPLEQILPKPL----TKIEMKTVPLTTKEEKGIGIFPG 580 590 600 610 620 1040 1050 1060 1070 1080 mKIAA0 P---HSESTDTASDSEGHLS--EDSSEVDASEVTVVKGSLGGDEKQDWDPSASLSKVNND .: : . .. ..::. . .. ....... : . :. :: . . . mKIAA1 ISVMESSSREEVNGRQAHLAIPQLGKPLQSKQLSQVPRPVF-TAKDRKDPCIDTHQYREG 630 640 650 660 670 680 1090 1100 1110 1120 1130 1140 mKIAA0 LSVLTRTGGVAASQSWVSRVCSVPHKIPDSLLLSSTECQPRSVCPLRPGSSVEVTNPLVM :: :. :. ..:. : .:: . : : . mKIAA1 LSKTTQD---QLFQTLIQRA------------------QRQSVLSFVP--------PSQF 690 700 710 1150 1160 1170 1180 1190 1200 mKIAA0 HLLHGNLPLEKVLPPGHRSSRLESSQLPLREQSQDRGTLQGTGENNRLAARINPGSAQTL .. :... :: . .:: . : .: ... :. : mKIAA1 NFAHSGFHLEDI----------STSQKFM------------LGFAGRRTSK--PAMAGHY 720 730 740 750 1210 1220 1230 1240 1250 1260 mKIAA0 KESILAQSYGASAGLVRAMASKAPAMSQKIAKMVTSLDSQHPETELTPSSGNLEEIDSKE .: ..:: .. .. : : ... . .: : . . : .: ::.::: mKIAA1 LLNI--STYGRGTENIKRTHSVNPDDRFCLSSPTEALRMGHADYKNT--TG---EISSKE 760 770 780 790 800 1270 1280 1290 1300 1310 1320 mKIAA0 HLSSFLCEEQ--KEGHSLSQGSDPGAAPGQCLGDHTTSKVPCFSSTNVSLSFGSEQTDGT :. :.. : . .: .: :. : : : :::: :. . .:.. mKIAA1 DESD---EDRVGDEQEPISVKEEPWAS--QSSGRHPHHGEA--SSTNDCLASKNGKTEAP 810 820 830 840 850 860 1330 1340 1350 1360 1370 1380 mKIAA0 LSDQNNAGGHEKKLFGPGNTVTTLQCPRSEEQTPLPAEVPPVFPSRKIEPSKN-SVSGGV .:.:.. : .:. .:. :.. :.:.. :: . :. .. . .. .: .. mKIAA1 VSEQTTLG-QENYIFSRGQA--------SDEKS-LPRDFIPAAHKQMTHAVRGKTVCSSP 870 880 890 900 910 1390 1400 1410 1420 1430 1440 mKIAA0 QTTRENRMPKPPPVSADSIKTEQTFLRDPIKADAENRKAAGYSSLELVGHLQGMPFVVDL . . . : ::: :.: .: :... .: : mKIAA1 ELFNSTALSLP----ADS-PTHQPLLLPPLQTP------------KLYGS---------- 920 930 940 1450 1460 1470 1480 1490 1500 mKIAA0 PFWKLPREPGKGFSQPLEPSSIPSQLNIKQALYGKLSKLQLSPTSFNYSSSSATFPKGLA : . : .. .. :. :... ..:. :. . ... . ...: . .:.: mKIAA1 -----PTQIGPSYRGMINVST-SSDMDHNSAIPGSQVSSNVGDV-MSFSVTVTTIP---- 950 960 970 980 990 1510 1520 1530 1540 1550 1560 mKIAA0 GGVVQLSHKASFGTGHTASLSLQMFADSSAVESISLQCACSLKAMIMCQGCGAFCHDDCI . .: ..: .. .: : :....:. .: : :::::::.::::::::::: mKIAA1 ------ASQAMNPSSHGQTIPVQTFPDDNSIEDTPSKCYCRLKAMIMCKGCGAFCHDDCI 1000 1010 1020 1030 1040 1570 mKIAA0 GPSKLCVLCLVVR ::::::: ::::: mKIAA1 GPSKLCVSCLVVR 1050 1060 1579 residues in 1 query sequences 1767438 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:33:09 2006 done: Mon Mar 27 10:33:10 2006 Scan time: 1.290 Display time: 0.150 Function used was FASTA [version 3.4t11 Apr 17, 2002]