FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0207.ptfa, 541 aa
 vs ./tmplib.26680 library

1768476 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 9.7203+/-0.00743; mu= -7.8691+/- 0.494
 mean_var=293.8536+/-71.114, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.0748

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4028  ( 351 res)   mid25067                   ( 351) 1348  159 7.6e-40


>>mKIAA4028  ( 351 res)   mid25067                        (351 aa)
 initn: 1014 init1: 972 opt: 1348  Z-score: 807.7  bits: 158.6 E(): 7.6e-40
Smith-Waterman score: 1348;  56.034% identity (57.692% ungapped) in 348 aa overlap (202-541:6-351)

             180       190       200       210       220           
mKIAA0 LEDHEIVVQVESTMPSESKFLFRKNYAKYEFFKNPVNFFPDQMVNWCQQSNGG--QAQLL
                                     ::    ..::..::. : ... :  . .:.
mKIAA4                          ALIPHFFLPQHTLFPEKMVSSCLDAQTGISHEDLI
                                        10        20        30     

     230       240       250           260       270       280     
mKIAA0 QNFLNTSSCPEIQGFLQVKEVGR----KSWKKLYVCLRRSGLYYSTKGTSKEPRHLQLLA
       :::::..: ::::::::..  ::    : ::...  :::::::::::::::.::::: .:
mKIAA4 QNFLNAGSFPEIQGFLQLRGSGRGSGRKLWKRFFCFLRRSGLYYSTKGTSKDPRHLQYVA
          40        50        60        70        80        90     

         290       300       310       320       330       340     
mKIAA0 DLEESSIFYLIAGKKQYNAPNEHGMCIKPNKAKTEMKELRLLCAEDEQIRTCWMTAFRLL
       :..::... .  :.: :. :.. :.:.:::: ..  : :...:.:::: ::::..::::.
mKIAA4 DVNESNVYVVTQGRKLYGMPTDFGFCVKPNKLRNGHKGLHIFCSEDEQSRTCWLAAFRLF
         100       110       120       130       140       150     

         350       360         370       380       390       400   
mKIAA0 KYGMLLYQNYRIPQRKGLPPPF--NAPMRSVSENSLVAMDFSGQIGRVIDNPAEAQSAAL
       :::. ::.::.  : . :   .  . :.::::.:.::::::::. ::::::: :: :::.
mKIAA4 KYGVQLYKNYQQAQSRHLRLSYLGSPPLRSVSDNTLVAMDFSGHAGRVIDNPREALSAAM
         160       170       180       190       200       210     

           410       420       430       440       450       460   
mKIAA0 EEGHAWRKRSTRMNILSSQSPLHPSTLNAVIHRTQHWFHGRISREESHRIIKQQGLVDGL
       ::..::::....   ::  .    :.:.:.::::: :::::::::::.:.: :::::::.
mKIAA4 EEAQAWRKKTNHR--LSLPTTCSGSSLSAAIHRTQPWFHGRISREESQRLIGQQGLVDGV
         220         230       240       250       260       270   

           470       480       490       500       510       520   
mKIAA0 FLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFTLDDGNTKFSDLIQLVDFYQL
       ::.:.:: ::..:::.::: ::.:.. ::: ::.:  .:..:.:.:.:.::.:::.:.::
mKIAA4 FLVRESQRNPQGFVLSLCHLQKVKHYLILPSEDEGCLYFSMDEGQTRFTDLLQLVEFHQL
           280       290       300       310       320       330   

           530       540 
mKIAA0 NKGVLPCKLKHHCIRVAL
       :.:.::: :.: : ::::
mKIAA4 NRGILPCLLRHCCARVAL
           340       350 




541 residues in 1 query   sequences
1768476 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:14:38 2006 done: Mon Mar 27 10:14:38 2006
 Scan time:  0.690 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]