FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0889.ptfa, 830 aa vs ./tmplib.26680 library 1768187 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.2235+/-0.00647; mu= 7.1078+/- 0.428 mean_var=235.9450+/-57.792, 0's: 0 Z-trim: 3 B-trim: 25 in 1/35 Lambda= 0.0835 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0802 ( 532 res) mbh00707 ( 532) 476 71 5.3e-13 >>mKIAA0802 ( 532 res) mbh00707 (532 aa) initn: 733 init1: 362 opt: 476 Z-score: 325.7 bits: 70.6 E(): 5.3e-13 Smith-Waterman score: 744; 33.333% identity (38.964% ungapped) in 519 aa overlap (331-782:5-515) 310 320 330 340 350 mKIAA0 EKQDNSWKEARSEKTHDKEGVSEAELGGTGLKRTKSVSSMSEFESLLDCSPYL------A :.:. ::: ::::. :.: ::.: . mKIAA0 RKGNLQRAVSVSCMSEFQRLMDVSPFLPEKGLPS 10 20 30 360 370 380 390 mKIAA0 GGDARNKKLPNGPA--------------FAFVSTE---PVEPEKDAKE--KAG--LSTRD .:. .. : .: .: .: : .: : : ..: .:. mKIAA0 AGSKEDVTPPLSPDDLKYIEEFHSNDWDYASPRAEADRPPDPWADRTEMGRVGHEATTEP 40 50 60 70 80 90 400 410 420 430 440 mKIAA0 CSH------------IGSLACQEPAGRQMQRSYTAPDKTGIRVYYSPPVARRLGVPVVHD : ... : .: :... ...:..: .:::. ::. .. mKIAA0 CPDPSWYLTTSVTMTTDTMTSPEHCQKQPLRTHVLTEQSGVHVLHSPPAIRRVD-SIASG 100 110 120 130 140 150 450 460 470 480 490 mKIAA0 KEGKILIEP-G-FLFTTAKPKESAEADGLAESSYSRWLCNFSRQRLDGGSGASTSGSGPA ::. .: : : .. :. . . : : .:: :. :. : :. . : mKIAA0 GEGRSRADPEGPFPMSRARGNLADAKGGHPEPVLNRWPCTPPRHPRDCVEGSLRPLDRPI 160 170 180 190 200 210 500 510 520 530 540 550 mKIAA0 FPAL------HDFEMSGNMSDDMKEITNCVRQAMRSGSLERKVKNTSSQTVGVATVGTQT :.: ....:: ::::::::.. ::.:. .: : .:.. . :: : :.:::: mKIAA0 CPSLGFASPLNSLDMSKNMSDDMKEVAFSVRNAICAGPAEPHVRDMACQTNGSRTAGTQT 220 230 240 250 260 270 560 570 580 590 600 mKIAA0 IRTVSVGLQTDPPRSSLHSKS------------WSPRSSSLVSVRSKQISSSLDKVHSRI :.:.::::::. :.: ..: .: :: :.::.:.. ...::.... mKIAA0 IQTISVGLQTEALRASGVTSSPHKCLTPKAGGGTTPVSSPSRSLRSRQVAPAIEKVQAKF 280 290 300 310 320 330 610 620 630 640 650 660 mKIAA0 ERPCCSPKYGSPKLQRRSVSKLDSTKDRSLWNLHQGKQNGSAWARSTTTRDSPVLRNIND :: :::::::::::::. .:: :. ..:. .. : . ::::::::::.::: .::: mKIAA0 ERTCCSPKYGSPKLQRKPLSKADQPNSRTSPGIPQKGFSESAWARSTTTRESPVHTTIND 340 350 360 370 380 390 670 680 690 700 710 mKIAA0 GLSSLFSVVEHSGSTESVWKLGMSEARTKPEPPKYGIVQEFFRNVCGRAPSPTTAAGE-- ::::::....:: . . :..:. . : :: . ::.::: ...: mKIAA0 GLSSLFNIIDHS----PIGVRAGSRSRSAEPRQELGPGQETGTSSRGRSPSPLGVGSETF 400 410 420 430 440 720 730 740 750 760 770 mKIAA0 -----ESCKKPEPLS-PASYHQPEGVSRILNKKAAKAGGSEEVRPTMLSQVGKDGILRDG :: . :: : .: :.:.:::::: . . .:: . .. :..:. :. mKIAA0 REEGGESTPVRQDLSAPPGYTLTENVARILNKKLLEHALKEERKQ---ASHGSSGLTSDS 450 460 470 480 490 500 780 790 800 810 820 830 mKIAA0 DGSLILPSEDAVCDCSAQSLASCFIRPSRNTIRHSPSKCRLHPSESGWGGEERAAPQ . .:.: mKIAA0 HTGEPVPAEPGSMENQTVLLTAPWGL 510 520 530 830 residues in 1 query sequences 1768187 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:31:15 2006 done: Mon Mar 27 10:31:16 2006 Scan time: 0.920 Display time: 0.030 Function used was FASTA [version 3.4t11 Apr 17, 2002]