FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0596.ptfa, 1070 aa
 vs ./tmplib.26680 library

1767947 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.9119+/-0.0075; mu= 0.2289+/- 0.497
 mean_var=273.6492+/-64.804, 0's: 0 Z-trim: 2  B-trim: 151 in 1/35
 Lambda= 0.0775

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0893  ( 1132 res)   mbg01684                  (1132)  221   39  0.0058


>>mKIAA0893  ( 1132 res)   mbg01684                       (1132 aa)
 initn: 179 init1: 105 opt: 221  Z-score: 145.6  bits: 38.7 E(): 0.0058
Smith-Waterman score: 241;  26.481% identity (30.159% ungapped) in 287 aa overlap (38-301:815-1089)

        10        20        30        40        50        60       
mKIAA0 HQDLIKIIYVDGNTQALLDTELPGGDKADGSLMDPRVGIRSVCISPNGQHLASGDRMGTL
                                     .: : .. .:.: . :.:.  : :.   ::
mKIAA0 KPSPGDSSGNLSRSKGEEDDKSKKQFVCINTLEDTQA-VRAVAFHPSGSLYAVGSNSKTL
          790       800       810       820        830       840   

                   70          80        90       100       110    
mKIAA0 RI-----------HE--LQSLSEMLKVEAHDSEILCLEYSKPDTGLKLLASASRDRLIHV
       :.           :.   : . .. . . : . : :. .: :  : .:::..: :. ..:
mKIAA0 RVCAYPEKMDASAHDNPKQPVVRFKRNKHHKGSIYCVAWS-P-CG-QLLATGSNDKYVKV
           850       860       870       880          890       900

          120           130         140       150        160       
mKIAA0 LDAGREYSLQQTLD----EHSSSITAVKF--AASDGQVRMISCGA-DKSIYFRTAQKSGE
       :  . :       :     :...:  . :  .  .: . .:: :: : .::    :. :.
mKIAA0 LPFNAETCNATGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTDCQR-GQ
              910       920       930       940       950          

       170         180       190       200       210       220     
mKIAA0 GVQFTRTH--HVVRKTTLYDMDVEPSWKYTAIGCQDRNIRIFNISSGKQKKLFKGS-QGE
       :..    :  :..   .::  .   .: . : : ::...:....   .  ..   . .: 
mKIAA0 GLHALSGHTGHIL---ALYTWS---GW-MIASGSQDKTVRFWDLRVPSCVRVVGTTFHGT
     960       970             980        990      1000      1010  

          230       240       250       260       270       280    
mKIAA0 DGTLIKVQTDPSGIYIATSCSDKNLSIFDFSSGECVATMFGHSEIVTGMKFSNDCKHLIS
        ... .: .::::  .::.  :..  ..:. .:. : ..  ::  : ...::   ..:..
mKIAA0 GSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLLT
           1020      1030      1040      1050      1060      1070  

          290       300       310       320       330       340    
mKIAA0 VSGDSCIFVWRLSSEMTISMRQRLAELRQRQRGIKQQGPTSPQRASGAKQHHAPVVPPSG
        : :  : :  :....:                                           
mKIAA0 GSYDMKIKVTDLQGDLTKQLPLMVVGEHKDKVIQCRWHTQDLSFLSSSADRTVTLWTYSG
           1080      1090      1100      1110      1120      1130  




1070 residues in 1 query   sequences
1767947 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:23:57 2006 done: Mon Mar 27 10:23:58 2006
 Scan time:  1.090 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]