FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0609.ptfa, 740 aa
 vs ./tmplib.26680 library

1768277 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.5828+/-0.00428; mu= 16.4973+/- 0.288
 mean_var=79.7703+/-18.134, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1436

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4105  ( 249 res)   mpm08180                   ( 249)  834  182 4.8e-47


>>mKIAA4105  ( 249 res)   mpm08180                        (249 aa)
 initn: 542 init1: 542 opt: 834  Z-score: 937.0  bits: 182.4 E(): 4.8e-47
Smith-Waterman score: 834;  58.636% identity (61.722% ungapped) in 220 aa overlap (401-610:31-249)

              380       390       400                410       420 
mKIAA0 LRVKNKHVEFFRNLYLTFLEYDGNLLRRELFG--CPSET-DV------NNENLQKQLSEL
                                     ::  :::   :.      :  .::. :..:
mKIAA4 WEATAKRALWMPQPVPSWGRAGEMGPCWLAFGRSCPSVLKDMLFFRSWNPAQLQQALTQL
               10        20        30        40        50        60

             430       440       450       460       470       480 
mKIAA0 DEDDLCYEFRRERFTVHRTHLYFLHYEFEPSADNTDVTLVAQLSMDRLQMLEAICKHWEG
       ::.. :.:::....::::.:. :: ..  :   . ::::::::::::::::::.: :: :
mKIAA4 DEEEPCFEFRQQQLTVHRVHITFLPHQPPPPQPH-DVTLVAQLSMDRLQMLEALCGHWPG
               70        80        90        100       110         

             490       500       510       520       530       540 
mKIAA0 PISLALYLSDAEAQQFLRYAQGSEVLMSRQNVGYHIVYKEGQFYPVNLLRNVAMKHISTP
       :.::::::.: ::::::.... : ::  :..:.::.::..: .:::: :::::. .  ::
mKIAA4 PMSLALYLTDEEAQQFLHFVETSPVLSMRKDVAYHVVYRDGPLYPVNQLRNVALAQALTP
     120       130       140       150       160       170         

             550       560       570        580       590       600
mKIAA0 YMFLSDIDFLPMYGLYEYLRKSVIQLDLANTKK-AMIVPAFETLRYRLSFPKSKAELLSM
       :.::::::::: :.::.::: :. ::.: . .: :..:::::::.::.:::.::::::..
mKIAA4 YVFLSDIDFLPAYSLYDYLRASIEQLELDSRRKTALVVPAFETLHYRFSFPNSKAELLTL
     180       190       200       210       220       230         

              610       620       630       640       650       660
mKIAA0 LDMGTLFTFRYHVWTKGHAPTNFAKWRTATTPYQVEWEADFEPYVVVRRDCPEYDRRFVG
       :: :.: :::                                                  
mKIAA4 LDAGSLHTFR                                                  
     240                                                           




740 residues in 1 query   sequences
1768277 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:24:15 2006 done: Mon Mar 27 10:24:16 2006
 Scan time:  0.820 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]