# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg01868.fasta.nr -Q ../query/mKIAA2024.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
mKIAA2024, 267 aa
vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library
2727779818 residues in 7921681 sequences
statistics sampled from 60000 to 7921283 sequences
Expectation_n fit: rho(ln(x))= 4.5510+/-0.000178; mu= 11.2434+/- 0.010
mean_var=57.4827+/-11.070, 0's: 26 Z-trim: 28 B-trim: 0 in 0/67
Lambda= 0.169163
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, open/ext: -10/-2, width: 16
The best scores are: opt bits E(7921681)
gi|55154059|gb|AAH85286.1| Ubr3 protein [Mus muscu ( 395) 1584 394.7 1.3e-107
gi|190336581|gb|AAI57931.1| Unknown (protein for I ( 950) 1584 395.0 2.5e-107
gi|148695109|gb|EDL27056.1| RIKEN cDNA A130030D10 (1716) 1584 395.2 3.9e-107
gi|117956969|gb|ABK59000.1| ubiquitin ligase [Mus (1889) 1584 395.2 4.2e-107
gi|166215030|sp|Q5U430.3|UBR3_MOUSE RecName: Full= (1889) 1584 395.2 4.2e-107
gi|160948616|ref|NP_001075017.2| E3 ubiquitin-prot (1892) 1584 395.2 4.2e-107
gi|149022184|gb|EDL79078.1| similar to zinc finger ( 952) 1508 376.5 9.5e-102
gi|194222290|ref|XP_001916973.1| PREDICTED: ubiqui (1747) 1439 359.8 1.8e-96
gi|109100017|ref|XP_001099162.1| PREDICTED: simila (1847) 1439 359.8 1.9e-96
gi|74004519|ref|XP_849717.1| PREDICTED: similar to ( 742) 1432 357.8 3e-96
gi|74004521|ref|XP_535954.2| PREDICTED: similar to ( 940) 1432 357.9 3.6e-96
gi|55733280|emb|CAH93322.1| hypothetical protein [ ( 513) 1429 357.0 3.8e-96
gi|34534517|dbj|BAC87032.1| unnamed protein produc ( 550) 1426 356.3 6.6e-96
gi|194381222|dbj|BAG64179.1| unnamed protein produ ( 579) 1426 356.3 6.9e-96
gi|34535884|dbj|BAC87462.1| unnamed protein produc ( 709) 1426 356.3 8e-96
gi|34533713|dbj|BAC86783.1| unnamed protein produc ( 741) 1426 356.4 8.3e-96
gi|119631653|gb|EAX11248.1| zinc finger protein 65 (1005) 1426 356.5 1.1e-95
gi|151554457|gb|AAI47914.1| Unknown (protein for I ( 864) 1425 356.2 1.1e-95
gi|166214992|sp|Q6ZT12.2|UBR3_HUMAN RecName: Full= (1888) 1426 356.7 1.7e-95
gi|126326548|ref|XP_001375774.1| PREDICTED: hypoth (1066) 1230 308.6 2.8e-81
gi|21739615|emb|CAD38857.1| hypothetical protein [ ( 343) 1185 297.3 2.3e-78
gi|149639653|ref|XP_001514801.1| PREDICTED: simila (1003) 1162 292.0 2.6e-76
gi|118093651|ref|XP_422004.2| PREDICTED: hypotheti (1075) 1072 270.1 1.1e-69
gi|47218067|emb|CAG09939.1| unnamed protein produc ( 433) 857 217.3 3.5e-54
gi|50603833|gb|AAH78396.1| Ubr3 protein [Danio rer ( 443) 806 204.9 2e-50
gi|116284330|gb|AAI24478.1| Ubr3 protein [Danio re ( 568) 807 205.2 2e-50
gi|95132443|gb|AAI16613.1| Ubr3 protein [Danio rer ( 607) 807 205.2 2.1e-50
gi|189523553|ref|XP_001919629.1| PREDICTED: ubiqui (1849) 807 205.6 5e-50
gi|210115454|gb|EEA63206.1| hypothetical protein B (1427) 579 149.9 2.3e-33
gi|210115457|gb|EEA63209.1| hypothetical protein B ( 372) 537 139.2 1e-30
gi|115745135|ref|XP_001203204.1| PREDICTED: hypoth (1202) 386 102.7 3.1e-19
gi|215503943|gb|EEC13437.1| ubiquitin ligase E3, p ( 820) 371 98.9 2.9e-18
gi|110755378|ref|XP_395468.3| PREDICTED: similar t (1302) 320 86.6 2.3e-14
gi|123236684|emb|CAM19288.1| novel protein contain ( 242) 306 82.7 6.7e-14
gi|156545275|ref|XP_001605178.1| PREDICTED: simila (1837) 291 79.7 4.1e-12
gi|189239891|ref|XP_969420.2| PREDICTED: similar t (1852) 254 70.6 2.1e-09
gi|198420661|ref|XP_002123189.1| PREDICTED: simila (1713) 223 63.0 3.8e-07
gi|115966201|ref|XP_001196708.1| PREDICTED: simila ( 301) 202 57.3 3.5e-06
gi|221125425|ref|XP_002162978.1| PREDICTED: simila ( 723) 196 56.2 1.9e-05
gi|115896349|ref|XP_788491.2| PREDICTED: similar t ( 252) 186 53.4 4.6e-05
>>gi|55154059|gb|AAH85286.1| Ubr3 protein [Mus musculus] (395 aa)
initn: 1584 init1: 1584 opt: 1584 Z-score: 2088.5 bits: 394.7 E(): 1.3e-107
Smith-Waterman score: 1584; 100.000% identity (100.000% similar) in 232 aa overlap (1-232:9-240)
10 20 30 40 50
mKIAA2 EYNPWKKLTQLVEDMNSQVGNEDQQPEVPILYHDVTSLLLIQILMMPQPLRK
::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|551 MRLYTIDSEYNPWKKLTQLVEDMNSQVGNEDQQPEVPILYHDVTSLLLIQILMMPQPLRK
10 20 30 40 50 60
60 70 80 90 100 110
mKIAA2 EHFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHAGALRKDTCDAEKCYEVLLSFVIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|551 EHFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHAGALRKDTCDAEKCYEVLLSFVIS
70 80 90 100 110 120
120 130 140 150 160 170
mKIAA2 ELSKGKLYYEEGAQECAMVSPIAWSPESMERYIQDFCLPFLRVSSLLQHHLFGEDLPSCQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|551 ELSKGKLYYEEGAQECAMVSPIAWSPESMERYIQDFCLPFLRVSSLLQHHLFGEDLPSCQ
130 140 150 160 170 180
180 190 200 210 220 230
mKIAA2 EEEEFSVLASCLGLLPTFYQTDHPFISASCLDWPVAAFDIITQWCFEITSFTERHAEQGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|551 EEEEFSVLASCLGLLPTFYQTDHPFISASCLDWPVAAFDIITQWCFEITSFTERHAEQGK
190 200 210 220 230 240
240 250 260
mKIAA2 VWREVGGNVLLGRGLMEEVKSRSLVAAGFKLIKLK
gi|551 ALLIQESRWKLPHLLQLPENYNTIFQYYHRKTCSVCTKVPKDPAVCLVCGTFVCLKGLCC
250 260 270 280 290 300
>>gi|190336581|gb|AAI57931.1| Unknown (protein for IMAGE (950 aa)
initn: 1584 init1: 1584 opt: 1584 Z-score: 2083.2 bits: 395.0 E(): 2.5e-107
Smith-Waterman score: 1584; 100.000% identity (100.000% similar) in 232 aa overlap (1-232:564-795)
10 20 30
mKIAA2 EYNPWKKLTQLVEDMNSQVGNEDQQPEVPI
::::::::::::::::::::::::::::::
gi|190 GGPSTAGKRSCLNQLFHVLALHMRLYTIDSEYNPWKKLTQLVEDMNSQVGNEDQQPEVPI
540 550 560 570 580 590
40 50 60 70 80 90
mKIAA2 LYHDVTSLLLIQILMMPQPLRKEHFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|190 LYHDVTSLLLIQILMMPQPLRKEHFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHAG
600 610 620 630 640 650
100 110 120 130 140 150
mKIAA2 ALRKDTCDAEKCYEVLLSFVISELSKGKLYYEEGAQECAMVSPIAWSPESMERYIQDFCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|190 ALRKDTCDAEKCYEVLLSFVISELSKGKLYYEEGAQECAMVSPIAWSPESMERYIQDFCL
660 670 680 690 700 710
160 170 180 190 200 210
mKIAA2 PFLRVSSLLQHHLFGEDLPSCQEEEEFSVLASCLGLLPTFYQTDHPFISASCLDWPVAAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|190 PFLRVSSLLQHHLFGEDLPSCQEEEEFSVLASCLGLLPTFYQTDHPFISASCLDWPVAAF
720 730 740 750 760 770
220 230 240 250 260
mKIAA2 DIITQWCFEITSFTERHAEQGKVWREVGGNVLLGRGLMEEVKSRSLVAAGFKLIKLK
::::::::::::::::::::::
gi|190 DIITQWCFEITSFTERHAEQGKALLIQESRWKLPHLLQLPENYNTIFQYYHRKTCSVCTK
780 790 800 810 820 830
>>gi|148695109|gb|EDL27056.1| RIKEN cDNA A130030D10 [Mus (1716 aa)
initn: 1584 init1: 1584 opt: 1584 Z-score: 2079.7 bits: 395.2 E(): 3.9e-107
Smith-Waterman score: 1584; 100.000% identity (100.000% similar) in 232 aa overlap (1-232:1330-1561)
10 20 30
mKIAA2 EYNPWKKLTQLVEDMNSQVGNEDQQPEVPI
::::::::::::::::::::::::::::::
gi|148 GGPSTAGKRSCLNQLFHVLALHMRLYTIDSEYNPWKKLTQLVEDMNSQVGNEDQQPEVPI
1300 1310 1320 1330 1340 1350
40 50 60 70 80 90
mKIAA2 LYHDVTSLLLIQILMMPQPLRKEHFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 LYHDVTSLLLIQILMMPQPLRKEHFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHAG
1360 1370 1380 1390 1400 1410
100 110 120 130 140 150
mKIAA2 ALRKDTCDAEKCYEVLLSFVISELSKGKLYYEEGAQECAMVSPIAWSPESMERYIQDFCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 ALRKDTCDAEKCYEVLLSFVISELSKGKLYYEEGAQECAMVSPIAWSPESMERYIQDFCL
1420 1430 1440 1450 1460 1470
160 170 180 190 200 210
mKIAA2 PFLRVSSLLQHHLFGEDLPSCQEEEEFSVLASCLGLLPTFYQTDHPFISASCLDWPVAAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|148 PFLRVSSLLQHHLFGEDLPSCQEEEEFSVLASCLGLLPTFYQTDHPFISASCLDWPVAAF
1480 1490 1500 1510 1520 1530
220 230 240 250 260
mKIAA2 DIITQWCFEITSFTERHAEQGKVWREVGGNVLLGRGLMEEVKSRSLVAAGFKLIKLK
::::::::::::::::::::::
gi|148 DIITQWCFEITSFTERHAEQGKALLIQESRWKLPHLLQLPENYNTIFQYYHRKTCSVCTK
1540 1550 1560 1570 1580 1590
>>gi|117956969|gb|ABK59000.1| ubiquitin ligase [Mus musc (1889 aa)
initn: 1584 init1: 1584 opt: 1584 Z-score: 2079.1 bits: 395.2 E(): 4.2e-107
Smith-Waterman score: 1584; 100.000% identity (100.000% similar) in 232 aa overlap (1-232:1503-1734)
10 20 30
mKIAA2 EYNPWKKLTQLVEDMNSQVGNEDQQPEVPI
::::::::::::::::::::::::::::::
gi|117 GGPSTAGKRSCLNQLFHVLALHMRLYTIDSEYNPWKKLTQLVEDMNSQVGNEDQQPEVPI
1480 1490 1500 1510 1520 1530
40 50 60 70 80 90
mKIAA2 LYHDVTSLLLIQILMMPQPLRKEHFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|117 LYHDVTSLLLIQILMMPQPLRKEHFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHAG
1540 1550 1560 1570 1580 1590
100 110 120 130 140 150
mKIAA2 ALRKDTCDAEKCYEVLLSFVISELSKGKLYYEEGAQECAMVSPIAWSPESMERYIQDFCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|117 ALRKDTCDAEKCYEVLLSFVISELSKGKLYYEEGAQECAMVSPIAWSPESMERYIQDFCL
1600 1610 1620 1630 1640 1650
160 170 180 190 200 210
mKIAA2 PFLRVSSLLQHHLFGEDLPSCQEEEEFSVLASCLGLLPTFYQTDHPFISASCLDWPVAAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|117 PFLRVSSLLQHHLFGEDLPSCQEEEEFSVLASCLGLLPTFYQTDHPFISASCLDWPVAAF
1660 1670 1680 1690 1700 1710
220 230 240 250 260
mKIAA2 DIITQWCFEITSFTERHAEQGKVWREVGGNVLLGRGLMEEVKSRSLVAAGFKLIKLK
::::::::::::::::::::::
gi|117 DIITQWCFEITSFTERHAEQGKALLIQESRWKLPHLLQLPENYNTIFQYYHRKTCSVCTK
1720 1730 1740 1750 1760 1770
>>gi|166215030|sp|Q5U430.3|UBR3_MOUSE RecName: Full=E3 u (1889 aa)
initn: 1584 init1: 1584 opt: 1584 Z-score: 2079.1 bits: 395.2 E(): 4.2e-107
Smith-Waterman score: 1584; 100.000% identity (100.000% similar) in 232 aa overlap (1-232:1503-1734)
10 20 30
mKIAA2 EYNPWKKLTQLVEDMNSQVGNEDQQPEVPI
::::::::::::::::::::::::::::::
gi|166 GGPSTAGKRSCLNQLFHVLALHMRLYTIDSEYNPWKKLTQLVEDMNSQVGNEDQQPEVPI
1480 1490 1500 1510 1520 1530
40 50 60 70 80 90
mKIAA2 LYHDVTSLLLIQILMMPQPLRKEHFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 LYHDVTSLLLIQILMMPQPLRKEHFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHAG
1540 1550 1560 1570 1580 1590
100 110 120 130 140 150
mKIAA2 ALRKDTCDAEKCYEVLLSFVISELSKGKLYYEEGAQECAMVSPIAWSPESMERYIQDFCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 ALRKDTCDAEKCYEVLLSFVISELSKGKLYYEEGAQECAMVSPIAWSPESMERYIQDFCL
1600 1610 1620 1630 1640 1650
160 170 180 190 200 210
mKIAA2 PFLRVSSLLQHHLFGEDLPSCQEEEEFSVLASCLGLLPTFYQTDHPFISASCLDWPVAAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|166 PFLRVSSLLQHHLFGEDLPSCQEEEEFSVLASCLGLLPTFYQTDHPFISASCLDWPVAAF
1660 1670 1680 1690 1700 1710
220 230 240 250 260
mKIAA2 DIITQWCFEITSFTERHAEQGKVWREVGGNVLLGRGLMEEVKSRSLVAAGFKLIKLK
::::::::::::::::::::::
gi|166 DIITQWCFEITSFTERHAEQGKALLIQESRWKLPHLLQLPENYNTIFQYYHRKTCSVCTK
1720 1730 1740 1750 1760 1770
>>gi|160948616|ref|NP_001075017.2| E3 ubiquitin-protein (1892 aa)
initn: 1584 init1: 1584 opt: 1584 Z-score: 2079.1 bits: 395.2 E(): 4.2e-107
Smith-Waterman score: 1584; 100.000% identity (100.000% similar) in 232 aa overlap (1-232:1506-1737)
10 20 30
mKIAA2 EYNPWKKLTQLVEDMNSQVGNEDQQPEVPI
::::::::::::::::::::::::::::::
gi|160 GGPSTAGKRSCLNQLFHVLALHMRLYTIDSEYNPWKKLTQLVEDMNSQVGNEDQQPEVPI
1480 1490 1500 1510 1520 1530
40 50 60 70 80 90
mKIAA2 LYHDVTSLLLIQILMMPQPLRKEHFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|160 LYHDVTSLLLIQILMMPQPLRKEHFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHAG
1540 1550 1560 1570 1580 1590
100 110 120 130 140 150
mKIAA2 ALRKDTCDAEKCYEVLLSFVISELSKGKLYYEEGAQECAMVSPIAWSPESMERYIQDFCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|160 ALRKDTCDAEKCYEVLLSFVISELSKGKLYYEEGAQECAMVSPIAWSPESMERYIQDFCL
1600 1610 1620 1630 1640 1650
160 170 180 190 200 210
mKIAA2 PFLRVSSLLQHHLFGEDLPSCQEEEEFSVLASCLGLLPTFYQTDHPFISASCLDWPVAAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|160 PFLRVSSLLQHHLFGEDLPSCQEEEEFSVLASCLGLLPTFYQTDHPFISASCLDWPVAAF
1660 1670 1680 1690 1700 1710
220 230 240 250 260
mKIAA2 DIITQWCFEITSFTERHAEQGKVWREVGGNVLLGRGLMEEVKSRSLVAAGFKLIKLK
::::::::::::::::::::::
gi|160 DIITQWCFEITSFTERHAEQGKALLIQESRWKLPHLLQLPENYNTIFQYYHRKTCSVCTK
1720 1730 1740 1750 1760 1770
>>gi|149022184|gb|EDL79078.1| similar to zinc finger pro (952 aa)
initn: 1508 init1: 1508 opt: 1508 Z-score: 1983.0 bits: 376.5 E(): 9.5e-102
Smith-Waterman score: 1508; 94.397% identity (98.276% similar) in 232 aa overlap (1-232:566-797)
10 20 30
mKIAA2 EYNPWKKLTQLVEDMNSQVGNEDQQPEVPI
:::::::::.::::::::::.::::::::.
gi|149 GGASTAGKRSCLNQLFHVLALHMRLYTIDSEYNPWKKLTHLVEDMNSQVGSEDQQPEVPV
540 550 560 570 580 590
40 50 60 70 80 90
mKIAA2 LYHDVTSLLLIQILMMPQPLRKEHFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHAG
::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: :
gi|149 LYHDVTSLLLIQILMMPQPLQKEHFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHLG
600 610 620 630 640 650
100 110 120 130 140 150
mKIAA2 ALRKDTCDAEKCYEVLLSFVISELSKGKLYYEEGAQECAMVSPIAWSPESMERYIQDFCL
::.:::::::: :::::.:::::::::::: :::::::.:::::::::::::::::::::
gi|149 ALKKDTCDAEKSYEVLLGFVISELSKGKLYCEEGAQECTMVSPIAWSPESMERYIQDFCL
660 670 680 690 700 710
160 170 180 190 200 210
mKIAA2 PFLRVSSLLQHHLFGEDLPSCQEEEEFSVLASCLGLLPTFYQTDHPFISASCLDWPVAAF
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 PFLRISSLLQHHLFGEDLPSCQEEEEFSVLASCLGLLPTFYQTDHPFISASCLDWPVAAF
720 730 740 750 760 770
220 230 240 250 260
mKIAA2 DIITQWCFEITSFTERHAEQGKVWREVGGNVLLGRGLMEEVKSRSLVAAGFKLIKLK
:::::::::: :::::::.:::
gi|149 DIITQWCFEIRSFTERHADQGKALLIQESRWKLPHLLQLPENYNTIFQYYHRKTCSVCTK
780 790 800 810 820 830
>>gi|194222290|ref|XP_001916973.1| PREDICTED: ubiquitin (1747 aa)
initn: 1439 init1: 1439 opt: 1439 Z-score: 1888.3 bits: 359.8 E(): 1.8e-96
Smith-Waterman score: 1439; 88.362% identity (98.276% similar) in 232 aa overlap (1-232:1361-1592)
10 20 30
mKIAA2 EYNPWKKLTQLVEDMNSQVGNEDQQPEVPI
:::::.:::::::..:::.:::.:::::::
gi|194 GGASTAGKRSCLNQLFHVLALHMRLYSIDSEYNPWRKLTQLVEEVNSQLGNEEQQPEVPI
1340 1350 1360 1370 1380 1390
40 50 60 70 80 90
mKIAA2 LYHDVTSLLLIQILMMPQPLRKEHFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHAG
::::::::::::::::::::::.::::::::::::::::::.::::: .:::::::::.:
gi|194 LYHDVTSLLLIQILMMPQPLRKDHFTCIVKVLFTLLYTQALVALSVKCSEEDRSAWKHTG
1400 1410 1420 1430 1440 1450
100 110 120 130 140 150
mKIAA2 ALRKDTCDAEKCYEVLLSFVISELSKGKLYYEEGAQECAMVSPIAWSPESMERYIQDFCL
::.:.:::::: .:::::::::::::::::.:::.:::::::::::: ::::.:.:::::
gi|194 ALKKNTCDAEKSHEVLLSFVISELSKGKLYHEEGTQECAMVSPIAWSSESMEKYLQDFCL
1460 1470 1480 1490 1500 1510
160 170 180 190 200 210
mKIAA2 PFLRVSSLLQHHLFGEDLPSCQEEEEFSVLASCLGLLPTFYQTDHPFISASCLDWPVAAF
::::..::::::::::::::::::::::::.::::::::::::.::::::::::::: ::
gi|194 PFLRITSLLQHHLFGEDLPSCQEEEEFSVLSSCLGLLPTFYQTEHPFISASCLDWPVPAF
1520 1530 1540 1550 1560 1570
220 230 240 250 260
mKIAA2 DIITQWCFEITSFTERHAEQGKVWREVGGNVLLGRGLMEEVKSRSLVAAGFKLIKLK
:::.::::::..::::::::::
gi|194 DIISQWCFEINGFTERHAEQGKALLIQESRWKLPHLLQLPENYNTIFQYYHRKTCSVCTK
1580 1590 1600 1610 1620 1630
>>gi|109100017|ref|XP_001099162.1| PREDICTED: similar to (1847 aa)
initn: 1375 init1: 1375 opt: 1439 Z-score: 1888.0 bits: 359.8 E(): 1.9e-96
Smith-Waterman score: 1439; 89.655% identity (96.552% similar) in 232 aa overlap (1-232:1462-1692)
10 20 30
mKIAA2 EYNPWKKLTQLVEDMNSQVGNEDQQPEVPI
:::::.::::: :.:: :.: :.:::::::
gi|109 GGASTAGKRSCLNQLFHVLALHMRLYSIDSEYNPWRKLTQL-EEMNPQLGYEEQQPEVPI
1440 1450 1460 1470 1480 1490
40 50 60 70 80 90
mKIAA2 LYHDVTSLLLIQILMMPQPLRKEHFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHAG
::::::::::::::::::::::.::::::::::::::::::: :::: .:::::::::::
gi|109 LYHDVTSLLLIQILMMPQPLRKDHFTCIVKVLFTLLYTQALAELSVKCSEEDRSAWKHAG
1500 1510 1520 1530 1540 1550
100 110 120 130 140 150
mKIAA2 ALRKDTCDAEKCYEVLLSFVISELSKGKLYYEEGAQECAMVSPIAWSPESMERYIQDFCL
::.:.:::::: ::::::::::::::::::.:::.::::::.::::::::::.:.:::::
gi|109 ALKKSTCDAEKSYEVLLSFVISELSKGKLYHEEGTQECAMVNPIAWSPESMEKYLQDFCL
1560 1570 1580 1590 1600 1610
160 170 180 190 200 210
mKIAA2 PFLRVSSLLQHHLFGEDLPSCQEEEEFSVLASCLGLLPTFYQTDHPFISASCLDWPVAAF
::::..:::::::::::::::::::::::::::::::::::::.::::::::::::: ::
gi|109 PFLRITSLLQHHLFGEDLPSCQEEEEFSVLASCLGLLPTFYQTEHPFISASCLDWPVPAF
1620 1630 1640 1650 1660 1670
220 230 240 250 260
mKIAA2 DIITQWCFEITSFTERHAEQGKVWREVGGNVLLGRGLMEEVKSRSLVAAGFKLIKLK
:::::::::: :::::::::::
gi|109 DIITQWCFEIKSFTERHAEQGKALLIQESKWKLPHLLQLPENYNTIFQYYHRKTCSVCTK
1680 1690 1700 1710 1720 1730
>>gi|74004519|ref|XP_849717.1| PREDICTED: similar to zin (742 aa)
initn: 1432 init1: 1432 opt: 1432 Z-score: 1884.2 bits: 357.8 E(): 3e-96
Smith-Waterman score: 1432; 88.362% identity (97.845% similar) in 232 aa overlap (1-232:356-587)
10 20 30
mKIAA2 EYNPWKKLTQLVEDMNSQVGNEDQQPEVPI
:::::.:::::::..::: :::.:::::::
gi|740 GGASTAGKRSCLNQLFHVLALHMRLYSIDSEYNPWRKLTQLVEEVNSQQGNEEQQPEVPI
330 340 350 360 370 380
40 50 60 70 80 90
mKIAA2 LYHDVTSLLLIQILMMPQPLRKEHFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHAG
::::::::::::::::::::::.::::::::::::::::::.::::: .:::::::::.:
gi|740 LYHDVTSLLLIQILMMPQPLRKDHFTCIVKVLFTLLYTQALVALSVKCNEEDRSAWKHTG
390 400 410 420 430 440
100 110 120 130 140 150
mKIAA2 ALRKDTCDAEKCYEVLLSFVISELSKGKLYYEEGAQECAMVSPIAWSPESMERYIQDFCL
::.:.:::.:: ::::::::::::::::::.:::.:: ::::::.:::::::.:.:::::
gi|740 ALKKNTCDTEKSYEVLLSFVISELSKGKLYHEEGTQESAMVSPISWSPESMEKYLQDFCL
450 460 470 480 490 500
160 170 180 190 200 210
mKIAA2 PFLRVSSLLQHHLFGEDLPSCQEEEEFSVLASCLGLLPTFYQTDHPFISASCLDWPVAAF
::::..::::::::::::::::::::::::.::::::::::::.::::::::::::: ::
gi|740 PFLRITSLLQHHLFGEDLPSCQEEEEFSVLSSCLGLLPTFYQTEHPFISASCLDWPVPAF
510 520 530 540 550 560
220 230 240 250 260
mKIAA2 DIITQWCFEITSFTERHAEQGKVWREVGGNVLLGRGLMEEVKSRSLVAAGFKLIKLK
:::.::::::.:::::::::::
gi|740 DIISQWCFEINSFTERHAEQGKALLIQEARWKLPHLLQLPENYNTIFQYYHRKTCSVCTK
570 580 590 600 610 620
267 residues in 1 query sequences
2727779818 residues in 7921681 library sequences
Tcomplib [34.26] (2 proc)
start: Mon Mar 16 19:58:56 2009 done: Mon Mar 16 20:04:21 2009
Total Scan time: 758.040 Total Display time: 0.090
Function used was FASTA [version 34.26.5 April 26, 2007]