FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0071.ptfa, 316 aa vs ./tmplib.26680 library 1768701 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.9411+/-0.00527; mu= 7.9330+/- 0.353 mean_var=133.9097+/-31.429, 0's: 0 Z-trim: 6 B-trim: 25 in 1/35 Lambda= 0.1108 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1343 ( 395 res) mbp04105 ( 395) 617 109 3e-25 mKIAA1266 ( 522 res) mpj02768 ( 522) 170 38 0.0012 >>mKIAA1343 ( 395 res) mbp04105 (395 aa) initn: 911 init1: 542 opt: 617 Z-score: 545.6 bits: 109.5 E(): 3e-25 Smith-Waterman score: 909; 62.673% identity (65.700% ungapped) in 217 aa overlap (1-207:65-281) 10 20 30 mKIAA0 LFWHKHNIEKSLADLPNFTPFPDEWTVEDK :::::::::::::::::::::::::::::: mKIAA1 YHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDK 40 50 60 70 80 90 40 50 60 70 80 mKIAA0 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARK--QKRERE ::::::::::::.:::::::::::.::::::.::::::::..::.:::.::: ..... mKIAA1 VLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQG 100 110 120 130 140 150 90 100 110 120 130 140 mKIAA0 ESEDELEETNGSNPVDIEIDPNKESKKE---VPPTET--VPQVKKEKHSTQAKNRAKR-- .:.:..::.. . : . ::.::.:.: :..: . ..: .: : .....: mKIAA1 DSDDDVEEAHPMDGNDSDYDPKKEAKREGNADQPVQTSKIGLGRREYQSLQHRHHSQRSK 160 170 180 190 200 210 150 160 170 180 190 200 mKIAA0 -KPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGI .:::::.:.:::: ::: . .::.:.::::::::.:.:::.:: ::.:::::.:..::: mKIAA1 CRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGI 220 230 240 250 260 270 210 220 230 240 250 260 mKIAA0 EPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR : .. ::. mKIAA1 EEFKPPEAQTPQAPRTLGPSPPAPSSTPTPTVPIATLNQPPPLLRPTLPAAPALHRQPPP 280 290 300 310 320 330 >>mKIAA1266 ( 522 res) mpj02768 (522 aa) initn: 84 init1: 84 opt: 170 Z-score: 157.9 bits: 38.1 E(): 0.0012 Smith-Waterman score: 170; 32.609% identity (36.585% ungapped) in 92 aa overlap (23-113:277-359) 10 20 30 40 50 mKIAA0 LFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQ-ML .::.. . :::.:. .:: :. :.: .: mKIAA1 DTLYRHGYDLSSAISVLVPLGGPVLCRDEMEEWSASEACLFEEALEKYGKDFNDIRQDFL 250 260 270 280 290 300 60 70 80 90 100 110 mKIAA0 PDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREESEDELEETNGSNPVDIEIDPNK : ::..:....:: :: : ::...... . :.:..:... :. . .::. mKIAA1 PWKSLTSIIEYYYMWKTT-------DRYVQQKRLKAAEAESKLKQVY--IPTYSKPNPNQ 310 320 330 340 350 120 130 140 150 160 170 mKIAA0 ESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQL :. mKIAA1 ISSSNGKAGTVNGAVGTQFQPQSALLGRACESCYATQSHQWYSWGPPNMQCRLCATCWLY 360 370 380 390 400 410 316 residues in 1 query sequences 1768701 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:11:39 2006 done: Mon Mar 27 10:11:39 2006 Scan time: 0.520 Display time: 0.010 Function used was FASTA [version 3.4t11 Apr 17, 2002]