# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg01793.fasta.nr -Q ../query/mKIAA0071.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0071, 316 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7919339 sequences Expectation_n fit: rho(ln(x))= 5.5659+/-0.000188; mu= 7.9584+/- 0.011 mean_var=87.6322+/-16.851, 0's: 40 Z-trim: 49 B-trim: 3 in 1/63 Lambda= 0.137007 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|27503810|gb|AAH42731.1| REST corepressor 1 [Mus ( 382) 2072 419.1 6.4e-115 gi|148686697|gb|EDL18644.1| REST corepressor 1, is ( 387) 2072 419.2 6.4e-115 gi|90103519|sp|Q8CFE3.2|RCOR1_MOUSE RecName: Full= ( 477) 2072 419.2 7.5e-115 gi|194225376|ref|XP_001491572.2| PREDICTED: simila ( 383) 2022 409.3 6e-112 gi|114654936|ref|XP_522957.2| PREDICTED: REST core ( 391) 2010 406.9 3.2e-111 gi|194677014|ref|XP_582981.4| PREDICTED: similar t ( 430) 2006 406.1 5.9e-111 gi|74762776|sp|Q9UKL0.1|RCOR1_HUMAN RecName: Full= ( 482) 2005 406.0 7.4e-111 gi|119602199|gb|EAW81793.1| REST corepressor 1, is ( 485) 2005 406.0 7.4e-111 gi|194038111|ref|XP_001927812.1| PREDICTED: simila ( 487) 2003 405.6 9.8e-111 gi|148686698|gb|EDL18645.1| REST corepressor 1, is ( 408) 1999 404.7 1.5e-110 gi|126290195|ref|XP_001367137.1| PREDICTED: simila ( 497) 1973 399.7 6e-109 gi|119602200|gb|EAW81794.1| REST corepressor 1, is ( 488) 1955 396.1 7e-108 gi|73964508|ref|XP_855445.1| PREDICTED: similar to ( 450) 1954 395.9 7.6e-108 gi|224051750|ref|XP_002200610.1| PREDICTED: simila ( 382) 1938 392.7 6e-107 gi|149044102|gb|EDL97484.1| REST corepressor 1 (pr ( 501) 1935 392.2 1.1e-106 gi|169641910|gb|AAI60584.1| LOC733956 protein [Xen ( 434) 1765 358.5 1.3e-96 gi|89268897|emb|CAJ81645.1| REST corepressor 1 [Xe ( 432) 1753 356.1 6.7e-96 gi|82245407|sp|Q90WN5.1|RCOR1_XENLA RecName: Full= ( 431) 1748 355.1 1.3e-95 gi|149490219|ref|XP_001514692.1| PREDICTED: simila ( 253) 1535 312.9 4.2e-83 gi|26346306|dbj|BAC36804.1| unnamed protein produc ( 229) 1461 298.2 9.8e-79 gi|114572470|ref|XP_001169683.1| PREDICTED: REST c ( 549) 1323 271.2 3.1e-70 gi|114794805|pdb|2IW5|B Chain B, Structural Basis ( 235) 1225 251.6 1.1e-64 gi|73983296|ref|XP_867275.1| PREDICTED: similar to ( 525) 1153 237.6 3.9e-60 gi|194218370|ref|XP_001488709.2| PREDICTED: simila ( 523) 1147 236.4 8.8e-60 gi|73983292|ref|XP_540889.2| PREDICTED: similar to ( 523) 1146 236.2 1e-59 gi|23958561|gb|AAH23587.1| REST corepressor 2 [Hom ( 523) 1145 236.0 1.2e-59 gi|147744586|sp|Q8IZ40.2|RCOR2_HUMAN RecName: Full ( 523) 1145 236.0 1.2e-59 gi|119594587|gb|EAW74181.1| REST corepressor 2, is ( 423) 1143 235.6 1.3e-59 gi|8346962|emb|CAB93943.1| CoREST protein [Mus mus ( 479) 1142 235.4 1.6e-59 gi|148701350|gb|EDL33297.1| REST corepressor 2 [Mu ( 491) 1142 235.4 1.7e-59 gi|114638234|ref|XP_001162519.1| PREDICTED: REST c ( 517) 1142 235.4 1.7e-59 gi|81909674|sp|Q5FWT8.1|RCOR2_RAT RecName: Full=RE ( 523) 1142 235.4 1.8e-59 gi|81914092|sp|Q8C796.1|RCOR2_MOUSE RecName: Full= ( 523) 1142 235.4 1.8e-59 gi|76657519|ref|XP_615207.2| PREDICTED: similar to ( 523) 1141 235.2 2e-59 gi|109105867|ref|XP_001118333.1| PREDICTED: simila ( 406) 1123 231.6 2e-58 gi|149243977|pdb|2V1D|B Chain B, Structural Basis ( 178) 1103 227.4 1.6e-57 gi|66564701|ref|XP_392644.2| PREDICTED: similar to ( 419) 1026 212.4 1.2e-52 gi|156212297|gb|EDO33362.1| predicted protein [Nem ( 350) 969 201.1 2.5e-49 gi|212510615|gb|EEB13751.1| REST corepressor, puta ( 428) 946 196.6 6.9e-48 gi|47214794|emb|CAF89621.1| unnamed protein produc ( 389) 904 188.3 2e-45 gi|40352800|gb|AAH64495.1| RCOR1 protein [Homo sap ( 299) 852 177.9 2.1e-42 gi|29835193|gb|AAH51003.1| RCOR1 protein [Homo sap ( 293) 833 174.2 2.7e-41 gi|149708576|ref|XP_001489961.1| PREDICTED: REST c ( 497) 806 169.0 1.7e-39 gi|119613829|gb|EAW93423.1| REST corepressor 3 [Ho ( 467) 804 168.6 2.1e-39 gi|109018384|ref|XP_001109084.1| PREDICTED: simila ( 495) 804 168.6 2.2e-39 gi|90103520|sp|Q9P2K3.2|RCOR3_HUMAN RecName: Full= ( 495) 804 168.6 2.2e-39 gi|114572468|ref|XP_514175.2| PREDICTED: REST core ( 549) 804 168.6 2.4e-39 gi|194380264|dbj|BAG63899.1| unnamed protein produ ( 553) 804 168.6 2.4e-39 gi|76638157|ref|XP_611771.2| PREDICTED: similar to ( 495) 803 168.4 2.5e-39 gi|157018128|gb|EAA08204.4| AGAP002488-PA [Anophel ( 431) 798 167.4 4.5e-39 >>gi|27503810|gb|AAH42731.1| REST corepressor 1 [Mus mus (382 aa) initn: 2072 init1: 2072 opt: 2072 Z-score: 2219.5 bits: 419.1 E(): 6.4e-115 Smith-Waterman score: 2072; 100.000% identity (100.000% similar) in 316 aa overlap (1-316:67-382) 10 20 30 mKIAA0 LFWHKHNIEKSLADLPNFTPFPDEWTVEDK :::::::::::::::::::::::::::::: gi|275 NQSLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDK 40 50 60 70 80 90 40 50 60 70 80 90 mKIAA0 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|275 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES 100 110 120 130 140 150 100 110 120 130 140 150 mKIAA0 EDELEETNGSNPVDIEIDPNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|275 EDELEETNGSNPVDIEIDPNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLS 160 170 180 190 200 210 160 170 180 190 200 210 mKIAA0 QEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|275 QEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ 220 230 240 250 260 270 220 230 240 250 260 270 mKIAA0 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|275 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW 280 290 300 310 320 330 280 290 300 310 mKIAA0 EAEHGKDETNGPANQKPVKSPESSIKIPEEEDEAASVLDVRYASAS :::::::::::::::::::::::::::::::::::::::::::::: gi|275 EAEHGKDETNGPANQKPVKSPESSIKIPEEEDEAASVLDVRYASAS 340 350 360 370 380 >>gi|148686697|gb|EDL18644.1| REST corepressor 1, isofor (387 aa) initn: 2072 init1: 2072 opt: 2072 Z-score: 2219.5 bits: 419.2 E(): 6.4e-115 Smith-Waterman score: 2072; 100.000% identity (100.000% similar) in 316 aa overlap (1-316:72-387) 10 20 30 mKIAA0 LFWHKHNIEKSLADLPNFTPFPDEWTVEDK :::::::::::::::::::::::::::::: gi|148 NQSLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDK 50 60 70 80 90 100 40 50 60 70 80 90 mKIAA0 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES 110 120 130 140 150 160 100 110 120 130 140 150 mKIAA0 EDELEETNGSNPVDIEIDPNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EDELEETNGSNPVDIEIDPNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLS 170 180 190 200 210 220 160 170 180 190 200 210 mKIAA0 QEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ 230 240 250 260 270 280 220 230 240 250 260 270 mKIAA0 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW 290 300 310 320 330 340 280 290 300 310 mKIAA0 EAEHGKDETNGPANQKPVKSPESSIKIPEEEDEAASVLDVRYASAS :::::::::::::::::::::::::::::::::::::::::::::: gi|148 EAEHGKDETNGPANQKPVKSPESSIKIPEEEDEAASVLDVRYASAS 350 360 370 380 >>gi|90103519|sp|Q8CFE3.2|RCOR1_MOUSE RecName: Full=REST (477 aa) initn: 2072 init1: 2072 opt: 2072 Z-score: 2218.2 bits: 419.2 E(): 7.5e-115 Smith-Waterman score: 2072; 100.000% identity (100.000% similar) in 316 aa overlap (1-316:162-477) 10 20 30 mKIAA0 LFWHKHNIEKSLADLPNFTPFPDEWTVEDK :::::::::::::::::::::::::::::: gi|901 NQSLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDK 140 150 160 170 180 190 40 50 60 70 80 90 mKIAA0 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES 200 210 220 230 240 250 100 110 120 130 140 150 mKIAA0 EDELEETNGSNPVDIEIDPNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 EDELEETNGSNPVDIEIDPNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLS 260 270 280 290 300 310 160 170 180 190 200 210 mKIAA0 QEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 QEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ 320 330 340 350 360 370 220 230 240 250 260 270 mKIAA0 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW 380 390 400 410 420 430 280 290 300 310 mKIAA0 EAEHGKDETNGPANQKPVKSPESSIKIPEEEDEAASVLDVRYASAS :::::::::::::::::::::::::::::::::::::::::::::: gi|901 EAEHGKDETNGPANQKPVKSPESSIKIPEEEDEAASVLDVRYASAS 440 450 460 470 >>gi|194225376|ref|XP_001491572.2| PREDICTED: similar to (383 aa) initn: 2022 init1: 2022 opt: 2022 Z-score: 2166.1 bits: 409.3 E(): 6e-112 Smith-Waterman score: 2022; 96.203% identity (99.367% similar) in 316 aa overlap (1-316:68-383) 10 20 30 mKIAA0 LFWHKHNIEKSLADLPNFTPFPDEWTVEDK :::::::::::::::::::::::::::::: gi|194 NQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDK 40 50 60 70 80 90 40 50 60 70 80 90 mKIAA0 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES 100 110 120 130 140 150 100 110 120 130 140 150 mKIAA0 EDELEETNGSNPVDIEIDPNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLS :::::::::.::.::::: ::::::::::::::::.:::::::::::::::::::::::: gi|194 EDELEETNGNNPIDIEIDQNKESKKEVPPTETVPQIKKEKHSTQAKNRAKRKPPKGMFLS 160 170 180 190 200 210 160 170 180 190 200 210 mKIAA0 QEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 QEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ 220 230 240 250 260 270 220 230 240 250 260 270 mKIAA0 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW 280 290 300 310 320 330 280 290 300 310 mKIAA0 EAEHGKDETNGPANQKPVKSPESSIKIPEEEDEAASVLDVRYASAS ::::::.:::::.::.::: :..:.:.::::::::::::::::::: gi|194 EAEHGKEETNGPSNQRPVKFPDNSVKMPEEEDEAASVLDVRYASAS 340 350 360 370 380 >>gi|114654936|ref|XP_522957.2| PREDICTED: REST corepres (391 aa) initn: 1965 init1: 1965 opt: 2010 Z-score: 2153.2 bits: 406.9 E(): 3.2e-111 Smith-Waterman score: 2010; 96.203% identity (99.051% similar) in 316 aa overlap (1-316:77-391) 10 20 30 mKIAA0 LFWHKHNIEKSLADLPNFTPFPDEWTVEDK :::::::::::::::::::::::::::::: gi|114 NQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDK 50 60 70 80 90 100 40 50 60 70 80 90 mKIAA0 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES 110 120 130 140 150 160 100 110 120 130 140 150 mKIAA0 EDELEETNGSNPVDIEIDPNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLS :::::::::.::.:::.: ::::::::::::::::::::::::::::::::::::::::: gi|114 EDELEETNGNNPIDIEVDQNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLS 170 180 190 200 210 220 160 170 180 190 200 210 mKIAA0 QEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ :::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::: gi|114 QEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ 230 240 250 260 270 280 220 230 240 250 260 270 mKIAA0 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW 290 300 310 320 330 340 280 290 300 310 mKIAA0 EAEHGKDETNGPANQKPVKSPESSIKIPEEEDEAASVLDVRYASAS ::::::.:::::.::::::::..:::.::::::: :::::::::: gi|114 EAEHGKEETNGPSNQKPVKSPDNSIKMPEEEDEAP-VLDVRYASAS 350 360 370 380 390 >>gi|194677014|ref|XP_582981.4| PREDICTED: similar to RE (430 aa) initn: 1883 init1: 1800 opt: 2006 Z-score: 2148.3 bits: 406.1 E(): 5.9e-111 Smith-Waterman score: 2006; 95.570% identity (99.367% similar) in 316 aa overlap (1-316:116-430) 10 20 30 mKIAA0 LFWHKHNIEKSLADLPNFTPFPDEWTVEDK :::::::::::::::::::::::::::::: gi|194 NQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDK 90 100 110 120 130 140 40 50 60 70 80 90 mKIAA0 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES :::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::: gi|194 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARRQKREREES 150 160 170 180 190 200 100 110 120 130 140 150 mKIAA0 EDELEETNGSNPVDIEIDPNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLS :::::::::.::.:.::: :::::::::::::.::.:::::::::::::::::::::::: gi|194 EDELEETNGNNPIDMEIDQNKESKKEVPPTETIPQIKKEKHSTQAKNRAKRKPPKGMFLS 210 220 230 240 250 260 160 170 180 190 200 210 mKIAA0 QEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: gi|194 QEDVEAVSANATAATTVLRQLDLELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ 270 280 290 300 310 320 220 230 240 250 260 270 mKIAA0 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW 330 340 350 360 370 380 280 290 300 310 mKIAA0 EAEHGKDETNGPANQKPVKSPESSIKIPEEEDEAASVLDVRYASAS ::::::.: :::.::::::::.::::.:::.::::::::::::::: gi|194 EAEHGKEE-NGPSNQKPVKSPDSSIKMPEEDDEAASVLDVRYASAS 390 400 410 420 430 >>gi|74762776|sp|Q9UKL0.1|RCOR1_HUMAN RecName: Full=REST (482 aa) initn: 1960 init1: 1960 opt: 2005 Z-score: 2146.6 bits: 406.0 E(): 7.4e-111 Smith-Waterman score: 2005; 95.886% identity (99.051% similar) in 316 aa overlap (1-316:168-482) 10 20 30 mKIAA0 LFWHKHNIEKSLADLPNFTPFPDEWTVEDK :::::::::::::::::::::::::::::: gi|747 NQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDK 140 150 160 170 180 190 40 50 60 70 80 90 mKIAA0 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES 200 210 220 230 240 250 100 110 120 130 140 150 mKIAA0 EDELEETNGSNPVDIEIDPNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLS ::::::.::.::.:::.: ::::::::::::::::::::::::::::::::::::::::: gi|747 EDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLS 260 270 280 290 300 310 160 170 180 190 200 210 mKIAA0 QEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ :::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::: gi|747 QEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ 320 330 340 350 360 370 220 230 240 250 260 270 mKIAA0 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW 380 390 400 410 420 430 280 290 300 310 mKIAA0 EAEHGKDETNGPANQKPVKSPESSIKIPEEEDEAASVLDVRYASAS ::::::.:::::.::::::::..:::.::::::: :::::::::: gi|747 EAEHGKEETNGPSNQKPVKSPDNSIKMPEEEDEAP-VLDVRYASAS 440 450 460 470 480 >>gi|119602199|gb|EAW81793.1| REST corepressor 1, isofor (485 aa) initn: 1960 init1: 1960 opt: 2005 Z-score: 2146.5 bits: 406.0 E(): 7.4e-111 Smith-Waterman score: 2005; 95.886% identity (99.051% similar) in 316 aa overlap (1-316:171-485) 10 20 30 mKIAA0 LFWHKHNIEKSLADLPNFTPFPDEWTVEDK :::::::::::::::::::::::::::::: gi|119 NQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDK 150 160 170 180 190 200 40 50 60 70 80 90 mKIAA0 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES 210 220 230 240 250 260 100 110 120 130 140 150 mKIAA0 EDELEETNGSNPVDIEIDPNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLS ::::::.::.::.:::.: ::::::::::::::::::::::::::::::::::::::::: gi|119 EDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLS 270 280 290 300 310 320 160 170 180 190 200 210 mKIAA0 QEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ :::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::: gi|119 QEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ 330 340 350 360 370 380 220 230 240 250 260 270 mKIAA0 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW 390 400 410 420 430 440 280 290 300 310 mKIAA0 EAEHGKDETNGPANQKPVKSPESSIKIPEEEDEAASVLDVRYASAS ::::::.:::::.::::::::..:::.::::::: :::::::::: gi|119 EAEHGKEETNGPSNQKPVKSPDNSIKMPEEEDEAP-VLDVRYASAS 450 460 470 480 >>gi|194038111|ref|XP_001927812.1| PREDICTED: similar to (487 aa) initn: 2003 init1: 2003 opt: 2003 Z-score: 2144.4 bits: 405.6 E(): 9.8e-111 Smith-Waterman score: 2003; 94.937% identity (98.734% similar) in 316 aa overlap (1-316:172-487) 10 20 30 mKIAA0 LFWHKHNIEKSLADLPNFTPFPDEWTVEDK :::::::::::::::::::::::::::::: gi|194 NQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDK 150 160 170 180 190 200 40 50 60 70 80 90 mKIAA0 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES 210 220 230 240 250 260 100 110 120 130 140 150 mKIAA0 EDELEETNGSNPVDIEIDPNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLS :::::. ::.:::: ::: :::::::::::::.::.:::::::::::::::::::::::: gi|194 EDELEDPNGTNPVDAEIDQNKESKKEVPPTETIPQIKKEKHSTQAKNRAKRKPPKGMFLS 270 280 290 300 310 320 160 170 180 190 200 210 mKIAA0 QEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 QEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ 330 340 350 360 370 380 220 230 240 250 260 270 mKIAA0 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW 390 400 410 420 430 440 280 290 300 310 mKIAA0 EAEHGKDETNGPANQKPVKSPESSIKIPEEEDEAASVLDVRYASAS ::::::.:::::.::.::::::. .:.:.::::::::::::.:::: gi|194 EAEHGKEETNGPSNQRPVKSPENPLKMPDEEDEAASVLDVRFASAS 450 460 470 480 >>gi|148686698|gb|EDL18645.1| REST corepressor 1, isofor (408 aa) initn: 2058 init1: 1999 opt: 1999 Z-score: 2141.2 bits: 404.7 E(): 1.5e-110 Smith-Waterman score: 2010; 92.398% identity (92.398% similar) in 342 aa overlap (1-316:67-408) 10 20 30 mKIAA0 LFWHKHNIEKSLADLPNFTPFPDEWTVEDK :::::::::::::::::::::::::::::: gi|148 NQSLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDK 40 50 60 70 80 90 40 50 60 70 80 90 mKIAA0 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREES 100 110 120 130 140 150 100 110 120 130 140 150 mKIAA0 EDELEETNGSNPVDIEIDPNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EDELEETNGSNPVDIEIDPNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLS 160 170 180 190 200 210 160 170 180 190 200 210 mKIAA0 QEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQ 220 230 240 250 260 270 220 230 240 250 260 270 mKIAA0 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW 280 290 300 310 320 330 280 290 300 mKIAA0 EAEHGKDETNGPANQKPVKSPESSIKIPEEEDE--------------------------A ::::::::::::::::::::::::::::::::: : gi|148 EAEHGKDETNGPANQKPVKSPESSIKIPEEEDEVNVEGVVSSLHQAHIPSHSAVAMLTWA 340 350 360 370 380 390 310 mKIAA0 ASVLDVRYASAS :::::::::::: gi|148 ASVLDVRYASAS 400 316 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 17:55:57 2009 done: Thu Mar 12 18:01:39 2009 Total Scan time: 793.020 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]