FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0029.ptfa, 453 aa
 vs ./tmplib.26680 library

1768564 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.2325+/-0.00704; mu= -0.5629+/- 0.468
 mean_var=258.1285+/-62.288, 0's: 0 Z-trim: 5  B-trim: 8 in 1/35
 Lambda= 0.0798

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1002  ( 1070 res)   mbh02928                  (1070) 1372  171 3.1e-43


>>mKIAA1002  ( 1070 res)   mbh02928                       (1070 aa)
 initn: 944 init1: 421 opt: 1372  Z-score: 868.6  bits: 171.2 E(): 3.1e-43
Smith-Waterman score: 1372;  50.698% identity (53.431% ungapped) in 430 aa overlap (35-453:652-1070)

           10        20        30         40         50        60  
mKIAA0 FDHIEFNLKYRSILLFTINTKQGLTHFAIAGYQ-VMPNQQQN-YQGIVGVQSPQSQSLMG
                                     : : .: ::::. :::..:::.::.:.:..
mKIAA1 NSNQQYRPLSHPVAYSPQRGQQLPQASQQPGLQPMMSNQQQTAYQGMLGVQQPQNQGLLS
             630       640       650       660       670       680 

             70        80        90       100        110       120 
mKIAA0 GQPNSTGPHIQGVVIPYPSVPSYQVSLPQGSQGIAHQTYQQPVVFP-NQSNQGSLPTTGM
       .: .: : ..::.:. :  .::::: . . ::.... ..:::.. : .:: ::.::: :.
mKIAA1 NQRSSMGGQMQGLVVQYTPLPSYQVPVGSDSQNVVQPSFQQPMLVPASQSVQGGLPTGGV
             690       700       710       720       730       740 

             130       140       150       160       170       180 
mKIAA0 PVYYSVIPPGQQSNLSSAVGYLQHPGSEQVQFPRTTSPCSSQQLQGHQCAAVPQQPPGGG
       :::::.:::.::.. : .::.:: ::::: :.:.. ::::  :.. .: ..:  .: : :
mKIAA1 PVYYSMIPPAQQNGTSPSVGFLQPPGSEQYQMPQSPSPCSPPQMS-QQYSGV--SPSGPG
             750       760       770       780        790          

             190        200       210       220       230          
mKIAA0 MVMMQLNLPNNPQS-RTHSPPQWKQNKHYCDHQRGQKCMDFSNMDNIVQPSPQL-SSPIL
       .:.::::.::.::. .. :  ::.. :.:  .:::::  :. . :.  : . :. :::. 
mKIAA1 VVVMQLNVPNGPQAPQNPSMVQWSHCKYYSVEQRGQKPGDLYSPDGSPQANAQMGSSPVT
      800       810       820       830       840       850        

     240       250       260       270       280       290         
mKIAA0 SPVQSPAPAQLSTLKTIRPSGPPLSIMSQFARPFVPGQGDARYPLLGQPLQYN----PPT
       ::.:::::. ...:...  .  :: ... : ::  :.:::.:: :::::::::    :: 
mKIAA1 SPTQSPAPSPVTSLSNVCTGLSPLPVLTPFPRPGGPAQGDGRYSLLGQPLQYNLSICPP-
      860       870       880       890       900       910        

         300         310       320       330       340       350   
mKIAA0 LLHGHIPH--QQGQSGSRHGNRGRRQAKKAASTDLGAGEAVVGKVLEITELPDGITRVEA
       ::::.  .  .::::: .:::::.::: :.::::::....:.:.:::.:.::.::::.::
mKIAA1 LLHGQSTYTVHQGQSGLKHGNRGKRQALKSASTDLGTADVVLGRVLEVTDLPEGITRTEA
       920       930       940       950       960       970       

           360       370       380       390       400       410   
mKIAA0 EKLFGELFKIGAKIRWLRDPQSQPQLRRHALCCGSGDNTVNPEHSKPSDLASTYTVLATF
       .::: .:   ::::.::.: :. :         :.:::. . :...  :::. ::..:.:
mKIAA1 DKLFTQLAMSGAKIQWLKDAQGLPG-------AGGGDNSGTAENGRHPDLAALYTIVAVF
       980       990      1000             1010      1020      1030

           420       430       440       450   
mKIAA0 PSISAAQSALKKQIHSVNKFKLRMSKKHYDFHILERASSQ
       ::  :::.:  .  .::..::::..::.::..::::::::
mKIAA1 PSPLAAQNASLRLNNSVSRFKLRVAKKNYDLRILERASSQ
             1040      1050      1060      1070




453 residues in 1 query   sequences
1768564 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:10:51 2006 done: Mon Mar 27 10:10:52 2006
 Scan time:  0.640 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]