FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1044.ptfa, 636 aa vs ./tmplib.26680 library 1768381 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.8153+/-0.00421; mu= 15.8260+/- 0.281 mean_var=85.2069+/-19.954, 0's: 0 Z-trim: 5 B-trim: 0 in 0/36 Lambda= 0.1389 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1144 ( 512 res) mfj54204 ( 512) 552 121 3.5e-28 mKIAA4250 ( 239 res) mpj00429 ( 239) 156 41 0.00017 >>mKIAA1144 ( 512 res) mfj54204 (512 aa) initn: 654 init1: 225 opt: 552 Z-score: 598.3 bits: 120.6 E(): 3.5e-28 Smith-Waterman score: 747; 29.572% identity (32.759% ungapped) in 514 aa overlap (3-478:9-510) 10 20 30 40 50 mKIAA1 PPLPDNMAAGVAAWLPFARAAAI-GWMPVASGPMPAPPRQERKRTQDALIVLNV .: ::: : : : : : . ..: . ..:. : .:: mKIAA1 CLPAGRGSFPPASAAGSRA--PRCSAPARRGRLGISSMTRQSLWDVSDTDVEDGEIRINV 10 20 30 40 50 60 70 80 90 100 mKIAA1 SGTRFQTWQDTLERYPDTLLGS-----SERDFF-----YHPETQQYFFDRDPDIFRHILN .: . . . :: :.:.: :: :.. .. : ....:::.:..: ..:. mKIAA1 GGFKRRLRSHTLLRFPETRLGRLLLCHSREAILELCDDYDDVQREFYFDRNPELFPYVLH 60 70 80 90 100 110 110 120 130 140 150 160 mKIAA1 FYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKDRRRE-NAERLQDDADTDN ::.::::: . :. ....:. ..:. .: .:: :. :. : . :. ....: .. mKIAA1 FYHTGKLHVMAELCVFSFSQEIEYWGINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQES 120 130 140 150 160 170 170 180 190 200 mKIAA1 TGES---------------ALPTMTARQRVWRAFENPHTSTMALVFYYVTGFFIAVSVIA : : . : . :...: :..:: :... :: .. . . :.:. mKIAA1 TTSSFDEILAFYNDASKFDGQPLGNFRRQLWLALDNPGYSVLSRVFSVLSILVVLGSIIT 180 190 200 210 220 230 210 220 230 240 250 260 mKIAA1 NVVETVP---CGSSPGHIKELPCGERYAVAFFCLDTACVMIFTVEYLLRLAAAPSRYRFV ....: .: :. : : :. . .. . :: : . :.:.::. .: mKIAA1 MCLNSLPDFQIPDSQGNPGEDP---RFEI----VEHFGIAWFTFELVARFAVAPDFLKFF 240 250 260 270 280 290 270 280 290 300 310 mKIAA1 RSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTL-------RVFRVFRIFKFSRHSQGLR ......::...:.:.:: ::.. . : ....: :..:.:::.:..::: ::: mKIAA1 KNALNLIDLMSIVPFYITLVVNLVVESSPTLANLGRVAQVLRLMRIFRILKLARHSTGLR 300 310 320 330 340 350 320 330 340 350 360 370 mKIAA1 ILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSASKFTSIPAAFWYTIVTMTTL :: ::: .:.:.::. :...: ::..: . :: . . ...::: .:.. :.:::. mKIAA1 SLGATLKYSYKEVGLLLLYLSVGISIFSVVAYTIEKEENEG-LATIPACWWWATVSMTTV 360 370 380 390 400 410 380 390 400 410 420 430 mKIAA1 GYGDMVPKTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRRAQKKARLA ::::.:: : :::. .: : :.:.::..::. .: ..::..:..... .. :... .. mKIAA1 GYGDVVPGTTAGKLTASACILAGILVVVLPITLIFNKFSHFYRRQKQLES--AMRSCDFG 420 430 440 450 460 440 450 460 470 480 490 mKIAA1 R-IRAAKSGSANAYMQSKRNGLLSNQLQSSEDEPAFISKSGSSFETQHHHLLHCLEKTTN .. . : . :. : ..:... . :.. :. .: . : mKIAA1 DGMKEVPSVNLRDYYAHKVKSLMASLTNMSRSSPSELSLDDSLH 470 480 490 500 510 500 510 520 530 540 550 mKIAA1 HEFVDEQVFEESCMEVATVNRPSSHRPSLSSQQGVTSTCCSRRHKKTFRIPNANVSGSHR >>mKIAA4250 ( 239 res) mpj00429 (239 aa) initn: 183 init1: 94 opt: 156 Z-score: 173.3 bits: 40.9 E(): 0.00017 Smith-Waterman score: 156; 29.114% identity (33.824% ungapped) in 158 aa overlap (1-154:15-154) 10 20 30 40 mKIAA1 PPLPDNMAAGVAAWLPFARAAAIGWMPVASGPMPAPPRQERKRTQD :: :....::... : : . : .:. : . . mKIAA4 GLVRIMAENHCELLPPAPSGLGAGLGGGL--CRRCSAGMGALAQRPGGV----------S 10 20 30 40 50 60 70 80 90 100 mKIAA1 ALIVLNVSGTRFQTWQDTLERYPDTLLG---SSERDF-FYHPETQQYFFDRDPDIFRHIL . :::.:: : : ..:: : : ..: ... :. . :: :..:::: : .: mKIAA4 KWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVL 50 60 70 80 90 100 110 120 130 140 150 160 mKIAA1 NFYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKDRRRENAERLQDDADTDN :. : ::: . . :: :... : . ::. :: :.. mKIAA4 NYLRHGKLVINKDLAEEGVLEEAEFYNITSLI------KLVKDKIRERDSRISQMPVKHV 110 120 130 140 150 160 170 180 190 200 210 220 mKIAA1 TGESALPTMTARQRVWRAFENPHTSTMALVFYYVTGFFIAVSVIANVVETVPCGSSPGHI mKIAA4 YRVLQCQEEELTQMVSTMSDGWKFEQLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTT 170 180 190 200 210 220 636 residues in 1 query sequences 1768381 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:34:43 2006 done: Mon Mar 27 10:34:43 2006 Scan time: 0.780 Display time: 0.020 Function used was FASTA [version 3.4t11 Apr 17, 2002]