FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0664.ptfa, 1237 aa vs ./tmplib.26680 library 1767780 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.7386+/-0.00486; mu= 13.3572+/- 0.325 mean_var=106.2161+/-24.686, 0's: 0 Z-trim: 2 B-trim: 2 in 1/35 Lambda= 0.1244 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA2000 ( 1263 res) mic17043 (1263) 245 56 6e-08 mKIAA0228 ( 557 res) mbg08794 ( 557) 149 38 0.0052 >>mKIAA2000 ( 1263 res) mic17043 (1263 aa) initn: 378 init1: 186 opt: 245 Z-score: 235.0 bits: 55.6 E(): 6e-08 Smith-Waterman score: 245; 24.161% identity (25.175% ungapped) in 298 aa overlap (865-1154:947-1240) 840 850 860 870 880 890 mKIAA0 DSVDQAVETYGLQKITLLREISLKTGIQILLKEYSFDSRHKPAFTEEDVLNIFPVVKHVN ..: .. . : : : :. . .. : . mKIAA2 VAQSLHQLAGVYVQWKKFGDAEQLYKQALEISENAYGADHPHAARE---LEALATLYHKQ 920 930 940 950 960 970 900 910 920 930 940 mKIAA0 PKASDAFHFFQSG-----QAKVQQGFLKEGCELINEALNLFNNVYGAMHVEICACLRLLA : .: :: ... :: ..: : : .::.: . . : . : : :. mKIAA2 NKYEQAEHFRKKSVIIRQQATRRKGSLYGFALLRRRALQLEELTLGKDKPENARTLNELG 980 990 1000 1010 1020 1030 950 960 970 980 990 1000 mKIAA0 RLHYIMGDYAEALSNQQKAVLMSERVMGIEHPNTIQEYMHLALYCFASSQLSTALSLLYR :...... : . .... : :::.: .::. : .:: : ..: : : : mKIAA2 VLYFLQNNLETAEQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCNEKKQYEKAEELYER 1040 1050 1060 1070 1080 1090 1010 1020 1030 1040 1050 1060 mKIAA0 ARYLMLLVFGEDHPEMALLDNNIGLVLHGVMEYDLSLRFLENALAVTTKYHGPKALKVAL : . ... ::: .: ...... . . . : .. . : :. . : ::: .:: mKIAA2 ALDIRRRALAPDHPSLAYTVKHLAILYKKTGKVDKAVPLYELAVEIRQKSFGPKHPSVAT 1100 1110 1120 1130 1140 1150 1070 1080 1090 1100 1110 1120 mKIAA0 SHHLVARVYESKAEFRSALQHEKEGYTIYKTQLGEDHEKTKESSEYLKCLTQQAVALQRT . .: .. . . :: ... ::. .::. : .. :. . : :. . .... mKIAA2 ALVNLAVLHSQMKKHSEALPLYERALKIYEDSLGRMHPRVGETLKNLAVLSYEEGNFEKA 1160 1170 1180 1190 1200 1210 1130 1140 1150 1160 1170 1180 mKIAA0 MNEIYRNG---SSANIPPLKFTAPSMTSVLEQLNVINGILFIPLSQKDLENLKAEVARRH :.:. . . :. : ::: : mKIAA2 A-ELYKRAMEIKEAETSLLGGKAPSRQSSSGDTFLFKTTHSPNVFLPQGQS 1220 1230 1240 1250 1260 >>mKIAA0228 ( 557 res) mbg08794 (557 aa) initn: 76 init1: 76 opt: 149 Z-score: 146.4 bits: 38.1 E(): 0.0052 Smith-Waterman score: 157; 28.426% identity (31.285% ungapped) in 197 aa overlap (936-1126:179-363) 910 920 930 940 950 960 mKIAA0 SGQAKVQQGFLKEGCELINEALNLFNNVYGAMHVEICACLRLLARLHYIMGDYAEALSNQ :.. :.:: : .:. :: : :: . mKIAA0 CKYHLGEETFKLAQTYMDKLSKHGQQANRAALYGELCALL--FAKSHY---D--EAYKWC 150 160 170 180 190 200 970 980 990 1000 1010 1020 mKIAA0 QKAVLMSERVMGIEHPNTIQEYMHLALYCFASSQLSTALSLLYRARYLMLLVFGEDHPEM .: :.: . :. ... . . : .. ... : .:. .: :: :: ::.. mKIAA0 VEA--MKEITAGLPVKVVVDVLRQASKACVVKREFKKAEQLIKHAVYLARDHFGSKHPKY 210 220 230 240 250 1030 1040 1050 1060 1070 mKIAA0 A--LLDNNIGLVLHGVMEYDLSLRFLENALAVTTKYHGPKALKVALSHHLVAR---VYE- . ::: :. : .: . :. . . :: . . : : ..:: .:. .: :.. mKIAA0 SDTLLD--YGFYLLNVDNICQSVAIYQAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQY 260 270 280 290 300 310 1080 1090 1100 1110 1120 1130 mKIAA0 SKAEFRSALQHEKEGYTIYKTQLGEDHEKTKESSEYLKCLTQQAVALQRTMNEIYRNGSS :...: .:: : ... : : ::: ::. .: : . .:.. mKIAA0 SSGKFDNALFHAERAIGIITHILPEDHLLLA-SSKRVKALILEEIAIDCHNKETEQRLLQ 320 330 340 350 360 370 1140 1150 1160 1170 1180 1190 mKIAA0 ANIPPLKFTAPSMTSVLEQLNVINGILFIPLSQKDLENLKAEVARRHQLQEANRNRDKAE mKIAA0 EAHDLHLSSLQLAKKAFGEFNVQTAKHYGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLG 380 390 400 410 420 430 1237 residues in 1 query sequences 1767780 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:25:43 2006 done: Mon Mar 27 10:25:44 2006 Scan time: 1.120 Display time: 0.090 Function used was FASTA [version 3.4t11 Apr 17, 2002]