FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0443.ptfa, 1350 aa vs ./tmplib.26680 library 1767667 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.9573+/-0.00515; mu= 6.4668+/- 0.343 mean_var=142.7754+/-33.252, 0's: 0 Z-trim: 6 B-trim: 0 in 0/36 Lambda= 0.1073 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1701 ( 360 res) mic08012 ( 360) 377 71 5.3e-13 mKIAA0512 ( 832 res) mia09016 ( 832) 351 67 1.6e-11 >>mKIAA1701 ( 360 res) mic08012 (360 aa) initn: 315 init1: 133 opt: 377 Z-score: 325.8 bits: 70.8 E(): 5.3e-13 Smith-Waterman score: 377; 28.296% identity (32.472% ungapped) in 311 aa overlap (852-1140:67-359) 830 840 850 860 870 mKIAA0 SLEAVRRGTFESAPGIKEEKVTGSWFWTDKAKVGAGSQ---TVET--GSETEEEAIFESL :.: :::. ..:: :.. : .:. .. mKIAA1 AEREAANANRGAGKSRDKGKGKAGSKSDAVAEVKAGSKGKVVAETKEGARPESKALVKGT 40 50 60 70 80 90 880 890 900 910 920 mKIAA0 I-WAAKKDSIQAGVKRVSKPKDDG------NIAVGSWLWSSDKATKEAKTLIVSEASPEN . . .. : : .::..:. . ...::.:.... ... : :. :: mKIAA1 SDFNHRTENKFARSTRKDKPSSDNWFWAGEDSGINSWFWKGEELSNN------SVAKCEN 100 110 120 130 140 150 930 940 950 960 970 980 mKIAA0 GKESVVKFGSRAKDELINKTGSGDNCKHSTEAETIVGAWFWEGDEASFESNPVPVCKAVC . .. .::.. . .. . . : :...: ::::::...:...: :: : : mKIAA1 KPSTSIQ--ARAEEPAPRTSHKSRSGAEEEEEENVIGNWFWEGDDTGFDTDPKPVFKIV- 160 170 180 190 200 990 1000 1010 1020 1030 1040 mKIAA0 EPESSAE-HEPDPSRRPQSWDEVTVQFKAGPWGKAGFPPMNPFRFP--KEAASLFAEMFG .:. : .: : ::..:.:::. :: : : : . .: .:: : ... mKIAA1 KPQPVDEINEKD---RPKDWSEVTIWPKA-P---AVTPAVLGYRSQDSSEARSSSYIVLA 210 220 230 240 250 260 1050 1060 1070 1080 1090 mKIAA0 GKPKLVEVGPEREPE------PQFPFQYDPSYRSVREIREHLKARESAQPENWSCNC-IQ .. . . .. .. . :..:: :: ... :::...: :: . ..: : .. mKIAA1 SNEEETSTACTKNTRSSLQSIPEYPFGSDPCIQTLDEIRQQIKIREENGIKPFACPCKLE 270 280 290 300 310 320 1100 1110 1120 1130 1140 1150 mKIAA0 CELRIGSEEFEELLLLMDRNRDPFIHEISKIAMGMRGASQFTRDFIRNSGVVSLIEALLN : : : :::.:. .. . ::.::.:..::::.. . :. mKIAA1 CYL--DSPEFEKLVNILKSTTDPLIHKIAQIAMGIHKVHPFA 330 340 350 360 1160 1170 1180 1190 1200 1210 mKIAA0 YPSSRVRTRFLENMVRMAPPYPDLNMIETYVCQICEDTFDYDLDSPDQLSGLTMITHLTA >>mKIAA0512 ( 832 res) mia09016 (832 aa) initn: 360 init1: 318 opt: 351 Z-score: 299.2 bits: 67.0 E(): 1.6e-11 Smith-Waterman score: 351; 25.830% identity (26.022% ungapped) in 271 aa overlap (1037-1307:518-786) 1010 1020 1030 1040 1050 1060 mKIAA0 SWDEVTVQFKAGPWGKAGFPPMNPFRFPKEAASLFAEMFGGKPKLVEVGPEREPEPQFPF ::. : ::. :.:. :: : . mKIAA0 KNRSGGKGKNRKNKVDVDELGMGFRPGDGAAAAAAASANGGQAFLAEI-PESEEGESGWT 490 500 510 520 530 540 1070 1080 1090 1100 1110 1120 mKIAA0 QYDPSYRSVREIREHLKARESAQPENWSCNCIQCELRIGSEEFEELLLLMDRNRDPFIHE . . . : .. .. :.... : . . . .: ......: :.... ::::.. mKIAA0 DTESDSDSEPDVPQRGKGKRTI-PMHKRPFPYEIDEILGVRDLRKVLALLQKSDDPFIQQ 550 560 570 580 590 600 1130 1140 1150 1160 1170 1180 mKIAA0 ISKIAMGMRGASQFTRDFIRNSGVVSLIEALLNYPSSRVRTRFLENMVRMAPPYPDLNMI .. .... . . ... ::. : . .: ..: . ... . : : .. : . . . mKIAA0 VALLTLSNNANYSCNQETIRKLGGLPIIANMINKTDPHIKEKALMAMNNLSENYENQGRL 610 620 630 640 650 660 1190 1200 1210 1220 1230 1240 mKIAA0 ETYVCQICEDTFDYDLDSPDQLSGLTMITHLTATSDYHKVVVNYLAGFFYLLNSGNTKTR ..:. .. .: . .:.: :. :: ..:..: :.::....:: .:.:: ::..:. : . mKIAA0 QVYMNKVMDDIMASNLNSAVQVVGLKFLTNMTITNDYQHLLVNSIANFFRLLSQGGGKIK 670 680 690 700 710 720 1250 1260 1270 1280 1290 1300 mKIAA0 FHVLKLLLNLSENLVMTKRLLVTDSVSEFMDLINREESDENIQIVLAIFETISKHIQKEA ..::.: :..:: : :.:: :. : : .: : .: . .:..:: : ... :. mKIAA0 VEILKILSNFAENPDMLKKLLGTQVPSSFSSLYNSYVESEILINALTLFEIIFDNLRAEV 730 740 750 760 770 780 1310 1320 1330 1340 1350 mKIAA0 LFSDDDDDDEEEDAVNLEPFISAFREAEKIAKELKRKPGNQKAP . mKIAA0 FNYREFNKGSLFYLCTTSGVCVKKIRALANHHDLLVKVKVIKLVNKF 790 800 810 820 830 1350 residues in 1 query sequences 1767667 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:20:52 2006 done: Mon Mar 27 10:20:53 2006 Scan time: 1.140 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]