FASTA searches a protein or DNA sequence data bank
version 3.4t11 Apr 17, 2002
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
../query/mKIAA0443.ptfa, 1350 aa
vs ./tmplib.26680 library
1767667 residues in 2168 sequences
Expectation_n fit: rho(ln(x))= 6.9573+/-0.00515; mu= 6.4668+/- 0.343
mean_var=142.7754+/-33.252, 0's: 0 Z-trim: 6 B-trim: 0 in 0/36
Lambda= 0.1073
FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 40, opt: 28, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2168)
mKIAA1701 ( 360 res) mic08012 ( 360) 377 71 5.3e-13
mKIAA0512 ( 832 res) mia09016 ( 832) 351 67 1.6e-11
>>mKIAA1701 ( 360 res) mic08012 (360 aa)
initn: 315 init1: 133 opt: 377 Z-score: 325.8 bits: 70.8 E(): 5.3e-13
Smith-Waterman score: 377; 28.296% identity (32.472% ungapped) in 311 aa overlap (852-1140:67-359)
830 840 850 860 870
mKIAA0 SLEAVRRGTFESAPGIKEEKVTGSWFWTDKAKVGAGSQ---TVET--GSETEEEAIFESL
:.: :::. ..:: :.. : .:. ..
mKIAA1 AEREAANANRGAGKSRDKGKGKAGSKSDAVAEVKAGSKGKVVAETKEGARPESKALVKGT
40 50 60 70 80 90
880 890 900 910 920
mKIAA0 I-WAAKKDSIQAGVKRVSKPKDDG------NIAVGSWLWSSDKATKEAKTLIVSEASPEN
. . .. : : .::..:. . ...::.:.... ... : :. ::
mKIAA1 SDFNHRTENKFARSTRKDKPSSDNWFWAGEDSGINSWFWKGEELSNN------SVAKCEN
100 110 120 130 140 150
930 940 950 960 970 980
mKIAA0 GKESVVKFGSRAKDELINKTGSGDNCKHSTEAETIVGAWFWEGDEASFESNPVPVCKAVC
. .. .::.. . .. . . : :...: ::::::...:...: :: : :
mKIAA1 KPSTSIQ--ARAEEPAPRTSHKSRSGAEEEEEENVIGNWFWEGDDTGFDTDPKPVFKIV-
160 170 180 190 200
990 1000 1010 1020 1030 1040
mKIAA0 EPESSAE-HEPDPSRRPQSWDEVTVQFKAGPWGKAGFPPMNPFRFP--KEAASLFAEMFG
.:. : .: : ::..:.:::. :: : : : . .: .:: : ...
mKIAA1 KPQPVDEINEKD---RPKDWSEVTIWPKA-P---AVTPAVLGYRSQDSSEARSSSYIVLA
210 220 230 240 250 260
1050 1060 1070 1080 1090
mKIAA0 GKPKLVEVGPEREPE------PQFPFQYDPSYRSVREIREHLKARESAQPENWSCNC-IQ
.. . . .. .. . :..:: :: ... :::...: :: . ..: : ..
mKIAA1 SNEEETSTACTKNTRSSLQSIPEYPFGSDPCIQTLDEIRQQIKIREENGIKPFACPCKLE
270 280 290 300 310 320
1100 1110 1120 1130 1140 1150
mKIAA0 CELRIGSEEFEELLLLMDRNRDPFIHEISKIAMGMRGASQFTRDFIRNSGVVSLIEALLN
: : : :::.:. .. . ::.::.:..::::.. . :.
mKIAA1 CYL--DSPEFEKLVNILKSTTDPLIHKIAQIAMGIHKVHPFA
330 340 350 360
1160 1170 1180 1190 1200 1210
mKIAA0 YPSSRVRTRFLENMVRMAPPYPDLNMIETYVCQICEDTFDYDLDSPDQLSGLTMITHLTA
>>mKIAA0512 ( 832 res) mia09016 (832 aa)
initn: 360 init1: 318 opt: 351 Z-score: 299.2 bits: 67.0 E(): 1.6e-11
Smith-Waterman score: 351; 25.830% identity (26.022% ungapped) in 271 aa overlap (1037-1307:518-786)
1010 1020 1030 1040 1050 1060
mKIAA0 SWDEVTVQFKAGPWGKAGFPPMNPFRFPKEAASLFAEMFGGKPKLVEVGPEREPEPQFPF
::. : ::. :.:. :: : .
mKIAA0 KNRSGGKGKNRKNKVDVDELGMGFRPGDGAAAAAAASANGGQAFLAEI-PESEEGESGWT
490 500 510 520 530 540
1070 1080 1090 1100 1110 1120
mKIAA0 QYDPSYRSVREIREHLKARESAQPENWSCNCIQCELRIGSEEFEELLLLMDRNRDPFIHE
. . . : .. .. :.... : . . . .: ......: :.... ::::..
mKIAA0 DTESDSDSEPDVPQRGKGKRTI-PMHKRPFPYEIDEILGVRDLRKVLALLQKSDDPFIQQ
550 560 570 580 590 600
1130 1140 1150 1160 1170 1180
mKIAA0 ISKIAMGMRGASQFTRDFIRNSGVVSLIEALLNYPSSRVRTRFLENMVRMAPPYPDLNMI
.. .... . . ... ::. : . .: ..: . ... . : : .. : . . .
mKIAA0 VALLTLSNNANYSCNQETIRKLGGLPIIANMINKTDPHIKEKALMAMNNLSENYENQGRL
610 620 630 640 650 660
1190 1200 1210 1220 1230 1240
mKIAA0 ETYVCQICEDTFDYDLDSPDQLSGLTMITHLTATSDYHKVVVNYLAGFFYLLNSGNTKTR
..:. .. .: . .:.: :. :: ..:..: :.::....:: .:.:: ::..:. : .
mKIAA0 QVYMNKVMDDIMASNLNSAVQVVGLKFLTNMTITNDYQHLLVNSIANFFRLLSQGGGKIK
670 680 690 700 710 720
1250 1260 1270 1280 1290 1300
mKIAA0 FHVLKLLLNLSENLVMTKRLLVTDSVSEFMDLINREESDENIQIVLAIFETISKHIQKEA
..::.: :..:: : :.:: :. : : .: : .: . .:..:: : ... :.
mKIAA0 VEILKILSNFAENPDMLKKLLGTQVPSSFSSLYNSYVESEILINALTLFEIIFDNLRAEV
730 740 750 760 770 780
1310 1320 1330 1340 1350
mKIAA0 LFSDDDDDDEEEDAVNLEPFISAFREAEKIAKELKRKPGNQKAP
.
mKIAA0 FNYREFNKGSLFYLCTTSGVCVKKIRALANHHDLLVKVKVIKLVNKF
790 800 810 820 830
1350 residues in 1 query sequences
1767667 residues in 2168 library sequences
Scomplib [34t11]
start: Mon Mar 27 10:20:52 2006 done: Mon Mar 27 10:20:53 2006
Scan time: 1.140 Display time: 0.060
Function used was FASTA [version 3.4t11 Apr 17, 2002]