FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1117.ptfa, 218 aa
 vs ./tmplib.26680 library

1768799 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.1650+/-0.00389; mu= 14.8230+/- 0.262
 mean_var=70.2187+/-15.639, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1531

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0933  ( 1556 res)   mbg10560                  (1556)  276   70 5.7e-13


>>mKIAA0933  ( 1556 res)   mbg10560                       (1556 aa)
 initn: 329 init1: 242 opt: 276  Z-score: 325.1  bits: 70.1 E(): 5.7e-13
Smith-Waterman score: 301;  34.637% identity (38.272% ungapped) in 179 aa overlap (35-213:1391-1552)

           10        20        30        40        50        60    
mKIAA1 SCEPKVLMTALSGYRTSGPSAAGLETTYTGGNGFSTSYNSQRWLNLYLSACKFLDLALAL
                                     ::: .    :   :..::::::::: :::.
mKIAA0 TFIQLEEDLKEEDESRNSHKSNRIKAPVADGNGSAGRVLSPSDLTMYLSACKFLDTALAF
             1370      1380      1390      1400      1410      1420

           70        80        90       100       110       120    
mKIAA1 PSENLPQFQMYRWAFIPEASDDSGLEVRRQGIHQREFKPYVVRLAKLLRKRAKKNPEEDC
       : ...: ::.:::::.::.. .    . .   ...: .:..::. .:::.:  .    : 
mKIAA0 PPDKMPLFQIYRWAFVPEVDTEHPAFLSELEENHQECRPHTVRILELLRSRYGEIGSSDE
             1430      1440      1450      1460      1470      1480

          130       140       150       160       170       180    
mKIAA1 SGRTLGWEPGHLLLTLCTMRNMEQLLPFFNVLSQVFNSKVTSRCGGHSGSPVLYPNSFPN
         :   . :   ::   ..  ..::.:::..:. .:...        :  :.  :..   
mKIAA0 ITRKKEF-P---LLRQHSVSCIRQLIPFFTTLNCAFKTQ--------SQLPADVPGTAAP
                 1490      1500      1510              1520        

          190       200       210        
mKIAA1 KDMKLENHKAFSSKARQKIEEMIEKDFLEGVIKT
       .    :: ...    :: .:: .:.::::     
mKIAA0 ECPVTENPRVL----RQ-LEECVEQDFLEHPEC 
     1530          1540       1550       




218 residues in 1 query   sequences
1768799 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:36:35 2006 done: Mon Mar 27 10:36:35 2006
 Scan time:  0.430 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]