FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4145.ptfa, 363 aa
 vs ./tmplib.26680 library

1768654 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.8045+/-0.00398; mu= 6.7198+/- 0.266
 mean_var=90.7895+/-20.930, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1346

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00318  ( 471 res)   mpj01782                   ( 471)  371   82 7.6e-17
mKIAA0832  ( 466 res)   mbg00280                   ( 466)  243   57 2.3e-09


>>mFLJ00318  ( 471 res)   mpj01782                        (471 aa)
 initn: 342 init1: 219 opt: 371  Z-score: 394.8  bits: 82.0 E(): 7.6e-17
Smith-Waterman score: 371;  31.507% identity (32.701% ungapped) in 219 aa overlap (130-348:255-465)

     100       110       120       130       140       150         
mKIAA4 DGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASR
                                     ..:.:  .. .    :.   :  ::..:..
mFLJ00 NENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPND-PVTNICQAADK
          230       240       250       260       270        280   

     160       170       180       190       200       210         
mKIAA4 LLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQ
        ::  ..::. :: :. :  : .. :.:: ::::.  .... . ... . .::. ..  .
mFLJ00 QLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHR
           290       300       310       320       330       340   

     220       230       240       250       260       270         
mKIAA4 NSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTGTS
       :: .    .:  .  .....  : :. ..:  ...:  : . :.:::::.::  ::.. .
mFLJ00 NSAHS---AG--VGAIFDRV--LTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA
              350           360       370       380       390      

     280       290       300       310       320       330         
mKIAA4 QIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSI
       ..: ..::.   :. : .. : :.  :.:..:.:::::: .. .  :.:::  :::.. :
mFLJ00 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI
        400       410       420       430       440       450      

     340       350       360   
mKIAA4 DSIIPYILKMETAEYNGQITGASL
       :...  .:.               
mFLJ00 DTFLMEMLEAPHQAT         
        460       470          

>>mKIAA0832  ( 466 res)   mbg00280                        (466 aa)
 initn: 221 init1: 121 opt: 243  Z-score: 260.5  bits: 57.2 E(): 2.3e-09
Smith-Waterman score: 243;  27.103% identity (29.146% ungapped) in 214 aa overlap (140-348:260-463)

     110       120       130       140          150       160      
mKIAA4 IHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSP-MP--EYLNVHYICESASRLLFLSMH
                                     ::.: .:  .   .  .:. :.: : . . 
mKIAA0 LNPQLVQPAKKPYNKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIG
     230       240       250       260       270       280         

        170       180       190       200       210       220      
mKIAA4 WARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDK
       ::. ::.:..:.   . ::... : :.. ::..   . .:.   :.   .....  : .:
mKIAA0 WAKHIPGFSTLSLADQMSLLQSAWMEILILGVVY--RSLSFEDELVYADDYIMDEDQ-SK
     290       300       310       320         330       340       

          230       240       250       260       270       280    
mKIAA4 LSG--DRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTGTSQIEKF
       :.:  :  . ... . : .    :: ::. .  :.. ::::.: . :   .  .  ..:.
mKIAA0 LAGLLDLNNAILQLVKKYK----SM-KLEKE--EFVTLKAIALANSDSMHIEDVEAVQKL
        350       360            370         380       390         

          290       300       310       320       330       340    
mKIAA4 QEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIP
       :.  .  ::::    . ::  : ...:. :: ::  :.. .....   : :.: . ... 
mKIAA0 QDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFL
     400       410       420       430       440       450         

          350       360   
mKIAA4 YILKMETAEYNGQITGASL
        .:.               
mKIAA0 EMLEAKV            
     460                  




363 residues in 1 query   sequences
1768654 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:03:16 2006 done: Mon Mar 27 11:03:17 2006
 Scan time:  0.620 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]