# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg01377.fasta.nr -Q ../query/mKIAA4145.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA4145, 363 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7918207 sequences Expectation_n fit: rho(ln(x))= 5.4070+/-0.000181; mu= 9.0757+/- 0.010 mean_var=72.3635+/-14.132, 0's: 38 Z-trim: 62 B-trim: 7 in 1/66 Lambda= 0.150770 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|1351191|sp|P49117.1|NR2C2_MOUSE RecName: Full=N ( 596) 2331 516.1 7.5e-144 gi|912822|gb|AAB33314.1| type II zinc finger DNA b ( 629) 2331 516.1 7.8e-144 gi|74178793|dbj|BAE34041.1| unnamed protein produc ( 596) 2325 514.8 1.9e-143 gi|149036770|gb|EDL91388.1| rCG56527, isoform CRA_ ( 596) 2322 514.1 2.9e-143 gi|149036768|gb|EDL91386.1| rCG56527, isoform CRA_ ( 629) 2322 514.1 3e-143 gi|1730013|sp|P55094.1|NR2C2_RAT RecName: Full=Nuc ( 596) 2316 512.8 7.2e-143 gi|73984965|ref|XP_541755.2| PREDICTED: similar to ( 633) 2309 511.3 2.2e-142 gi|149728243|ref|XP_001491080.1| PREDICTED: nuclea ( 596) 2299 509.1 9.3e-142 gi|149728246|ref|XP_001491100.1| PREDICTED: nuclea ( 611) 2299 509.1 9.5e-142 gi|1351190|sp|P49116.1|NR2C2_HUMAN RecName: Full=N ( 596) 2288 506.7 4.9e-141 gi|119584617|gb|EAW64213.1| nuclear receptor subfa ( 615) 2288 506.7 5e-141 gi|114585543|ref|XP_001158514.1| PREDICTED: nuclea ( 615) 2288 506.7 5e-141 gi|216409724|dbj|BAH02299.1| nuclear receptor subf ( 596) 2279 504.8 1.9e-140 gi|1144348|gb|AAC18408.1| TR4 [Mus musculus] ( 608) 2267 502.2 1.2e-139 gi|119914880|ref|XP_581828.3| PREDICTED: similar t ( 611) 2261 500.9 2.9e-139 gi|538261|gb|AAA21474.1| TR4 orphan receptor ( 615) 2247 497.8 2.4e-138 gi|126336217|ref|XP_001366331.1| PREDICTED: simila ( 596) 2223 492.6 8.8e-137 gi|126336219|ref|XP_001366393.1| PREDICTED: simila ( 618) 2223 492.6 9.1e-137 gi|149412644|ref|XP_001506287.1| PREDICTED: simila ( 596) 2205 488.7 1.3e-135 gi|149412646|ref|XP_001506329.1| PREDICTED: simila ( 620) 2205 488.7 1.4e-135 gi|224066723|ref|XP_002189996.1| PREDICTED: hypoth ( 629) 2175 482.2 1.3e-133 gi|118097135|ref|XP_414462.2| PREDICTED: similar t ( 525) 2168 480.6 3.2e-133 gi|149036769|gb|EDL91387.1| rCG56527, isoform CRA_ ( 607) 1977 439.1 1.1e-120 gi|114585551|ref|XP_001158180.1| PREDICTED: nuclea ( 627) 1952 433.7 5.1e-119 gi|114585555|ref|XP_001158237.1| PREDICTED: nuclea ( 558) 1943 431.7 1.8e-118 gi|114585549|ref|XP_516304.2| PREDICTED: nuclear r ( 597) 1943 431.7 1.9e-118 gi|169158319|emb|CAQ15167.1| novel protein similar ( 623) 1828 406.7 6.7e-111 gi|47223192|emb|CAG11327.1| unnamed protein produc ( 577) 1753 390.4 5.1e-106 gi|45708743|gb|AAH51670.1| NR2C2 protein [Homo sap ( 530) 1713 381.6 2e-103 gi|73909187|gb|AAI03687.1| Nr2c2 protein [Mus musc ( 501) 1673 372.9 7.9e-101 gi|47224450|emb|CAG08700.1| unnamed protein produc ( 597) 1497 334.7 3e-89 gi|149637974|ref|XP_001510105.1| PREDICTED: simila ( 561) 1483 331.6 2.4e-88 gi|224094384|ref|XP_002188160.1| PREDICTED: nuclea ( 563) 1436 321.4 2.9e-85 gi|224094380|ref|XP_002188130.1| PREDICTED: nuclea ( 604) 1436 321.4 3e-85 gi|123892381|sp|Q28CK1.1|NR2C1_XENTR RecName: Full ( 636) 1436 321.4 3.2e-85 gi|224094376|ref|XP_002188214.1| PREDICTED: nuclea ( 640) 1436 321.4 3.2e-85 gi|56207752|emb|CAI20776.1| novel protein similar ( 600) 1424 318.8 1.8e-84 gi|21518633|gb|AAM60748.1|AF323691_1 testis-specif ( 569) 1423 318.6 2.1e-84 gi|63102167|gb|AAH95365.1| Nuclear receptor subfam ( 600) 1422 318.4 2.5e-84 gi|109098035|ref|XP_001091445.1| PREDICTED: nuclea ( 632) 1420 318.0 3.5e-84 gi|126339675|ref|XP_001370429.1| PREDICTED: hypoth ( 605) 1418 317.5 4.6e-84 gi|82201033|sp|Q6GN21.1|N2C1A_XENLA RecName: Full= ( 637) 1408 315.3 2.2e-83 gi|82198455|sp|Q66J63.1|N2C1B_XENLA RecName: Full= ( 637) 1403 314.3 4.6e-83 gi|149742912|ref|XP_001493970.1| PREDICTED: nuclea ( 605) 1381 309.5 1.2e-81 gi|68132040|gb|AAY85286.1| TR2 [Danio rerio] ( 580) 1371 307.3 5.3e-81 gi|73978201|ref|XP_854792.1| PREDICTED: similar to ( 605) 1366 306.2 1.2e-80 gi|117306695|gb|AAI26644.1| Nuclear receptor subfa ( 608) 1362 305.3 2.1e-80 gi|14388521|dbj|BAB60786.1| hypothetical protein [ ( 603) 1354 303.6 7.1e-80 gi|114646277|ref|XP_001137621.1| PREDICTED: hypoth ( 678) 1354 303.6 7.8e-80 gi|158256074|dbj|BAF84008.1| unnamed protein produ ( 603) 1346 301.8 2.4e-79 >>gi|1351191|sp|P49117.1|NR2C2_MOUSE RecName: Full=Nucle (596 aa) initn: 2331 init1: 2331 opt: 2331 Z-score: 2738.9 bits: 516.1 E(): 7.5e-144 Smith-Waterman score: 2331; 100.000% identity (100.000% similar) in 363 aa overlap (1-363:234-596) 10 20 30 mKIAA4 ARQTGLLDPGMLVNIQQPLIREDGTVLLAA :::::::::::::::::::::::::::::: gi|135 CAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLAA 210 220 230 240 250 260 40 50 60 70 80 90 mKIAA4 DSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 DSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTT 270 280 290 300 310 320 100 110 120 130 140 150 mKIAA4 DSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 DSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV 330 340 350 360 370 380 160 170 180 190 200 210 mKIAA4 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI 390 400 410 420 430 440 220 230 240 250 260 270 mKIAA4 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP 450 460 470 480 490 500 280 290 300 310 320 330 mKIAA4 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 510 520 530 540 550 560 340 350 360 mKIAA4 TGLIGNVSIDSIIPYILKMETAEYNGQITGASL ::::::::::::::::::::::::::::::::: gi|135 TGLIGNVSIDSIIPYILKMETAEYNGQITGASL 570 580 590 >>gi|912822|gb|AAB33314.1| type II zinc finger DNA bindi (629 aa) initn: 2331 init1: 2331 opt: 2331 Z-score: 2738.6 bits: 516.1 E(): 7.8e-144 Smith-Waterman score: 2331; 100.000% identity (100.000% similar) in 363 aa overlap (1-363:267-629) 10 20 30 mKIAA4 ARQTGLLDPGMLVNIQQPLIREDGTVLLAA :::::::::::::::::::::::::::::: gi|912 CAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLAA 240 250 260 270 280 290 40 50 60 70 80 90 mKIAA4 DSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|912 DSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTT 300 310 320 330 340 350 100 110 120 130 140 150 mKIAA4 DSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|912 DSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV 360 370 380 390 400 410 160 170 180 190 200 210 mKIAA4 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|912 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI 420 430 440 450 460 470 220 230 240 250 260 270 mKIAA4 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|912 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP 480 490 500 510 520 530 280 290 300 310 320 330 mKIAA4 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|912 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 540 550 560 570 580 590 340 350 360 mKIAA4 TGLIGNVSIDSIIPYILKMETAEYNGQITGASL ::::::::::::::::::::::::::::::::: gi|912 TGLIGNVSIDSIIPYILKMETAEYNGQITGASL 600 610 620 >>gi|74178793|dbj|BAE34041.1| unnamed protein product [M (596 aa) initn: 2325 init1: 2325 opt: 2325 Z-score: 2731.9 bits: 514.8 E(): 1.9e-143 Smith-Waterman score: 2325; 99.725% identity (99.725% similar) in 363 aa overlap (1-363:234-596) 10 20 30 mKIAA4 ARQTGLLDPGMLVNIQQPLIREDGTVLLAA :::::::::::::::::::::::::::::: gi|741 CAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLAA 210 220 230 240 250 260 40 50 60 70 80 90 mKIAA4 DSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 DSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTT 270 280 290 300 310 320 100 110 120 130 140 150 mKIAA4 DSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 DSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV 330 340 350 360 370 380 160 170 180 190 200 210 mKIAA4 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI 390 400 410 420 430 440 220 230 240 250 260 270 mKIAA4 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP 450 460 470 480 490 500 280 290 300 310 320 330 mKIAA4 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF ::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::: gi|741 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARTLVRLPALRLMSSNITEELFF 510 520 530 540 550 560 340 350 360 mKIAA4 TGLIGNVSIDSIIPYILKMETAEYNGQITGASL ::::::::::::::::::::::::::::::::: gi|741 TGLIGNVSIDSIIPYILKMETAEYNGQITGASL 570 580 590 >>gi|149036770|gb|EDL91388.1| rCG56527, isoform CRA_c [R (596 aa) initn: 2322 init1: 2322 opt: 2322 Z-score: 2728.3 bits: 514.1 E(): 2.9e-143 Smith-Waterman score: 2322; 99.449% identity (100.000% similar) in 363 aa overlap (1-363:234-596) 10 20 30 mKIAA4 ARQTGLLDPGMLVNIQQPLIREDGTVLLAA .::::::::::::::::::::::::::::. gi|149 CAASTEKIYIRKDLRSPLIATPTFVADKDGSRQTGLLDPGMLVNIQQPLIREDGTVLLAT 210 220 230 240 250 260 40 50 60 70 80 90 mKIAA4 DSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTT 270 280 290 300 310 320 100 110 120 130 140 150 mKIAA4 DSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV 330 340 350 360 370 380 160 170 180 190 200 210 mKIAA4 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI 390 400 410 420 430 440 220 230 240 250 260 270 mKIAA4 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP 450 460 470 480 490 500 280 290 300 310 320 330 mKIAA4 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 510 520 530 540 550 560 340 350 360 mKIAA4 TGLIGNVSIDSIIPYILKMETAEYNGQITGASL ::::::::::::::::::::::::::::::::: gi|149 TGLIGNVSIDSIIPYILKMETAEYNGQITGASL 570 580 590 >>gi|149036768|gb|EDL91386.1| rCG56527, isoform CRA_a [R (629 aa) initn: 2322 init1: 2322 opt: 2322 Z-score: 2728.0 bits: 514.1 E(): 3e-143 Smith-Waterman score: 2322; 99.449% identity (100.000% similar) in 363 aa overlap (1-363:267-629) 10 20 30 mKIAA4 ARQTGLLDPGMLVNIQQPLIREDGTVLLAA .::::::::::::::::::::::::::::. gi|149 CAASTEKIYIRKDLRSPLIATPTFVADKDGSRQTGLLDPGMLVNIQQPLIREDGTVLLAT 240 250 260 270 280 290 40 50 60 70 80 90 mKIAA4 DSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTT 300 310 320 330 340 350 100 110 120 130 140 150 mKIAA4 DSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV 360 370 380 390 400 410 160 170 180 190 200 210 mKIAA4 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI 420 430 440 450 460 470 220 230 240 250 260 270 mKIAA4 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP 480 490 500 510 520 530 280 290 300 310 320 330 mKIAA4 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 540 550 560 570 580 590 340 350 360 mKIAA4 TGLIGNVSIDSIIPYILKMETAEYNGQITGASL ::::::::::::::::::::::::::::::::: gi|149 TGLIGNVSIDSIIPYILKMETAEYNGQITGASL 600 610 620 >>gi|1730013|sp|P55094.1|NR2C2_RAT RecName: Full=Nuclear (596 aa) initn: 2316 init1: 2316 opt: 2316 Z-score: 2721.3 bits: 512.8 E(): 7.2e-143 Smith-Waterman score: 2316; 99.174% identity (100.000% similar) in 363 aa overlap (1-363:234-596) 10 20 30 mKIAA4 ARQTGLLDPGMLVNIQQPLIREDGTVLLAA .::::::::::::::::::::::::::::. gi|173 CAASTEKIYIRKDLRSPLIATPTFVADKDGSRQTGLLDPGMLVNIQQPLIREDGTVLLAT 210 220 230 240 250 260 40 50 60 70 80 90 mKIAA4 DSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 DSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTT 270 280 290 300 310 320 100 110 120 130 140 150 mKIAA4 DSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 DSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV 330 340 350 360 370 380 160 170 180 190 200 210 mKIAA4 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI 390 400 410 420 430 440 220 230 240 250 260 270 mKIAA4 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::: gi|173 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGHEYAYLKAIVLFSP 450 460 470 480 490 500 280 290 300 310 320 330 mKIAA4 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 510 520 530 540 550 560 340 350 360 mKIAA4 TGLIGNVSIDSIIPYILKMETAEYNGQITGASL ::::::::::::::::::::::::::::::::: gi|173 TGLIGNVSIDSIIPYILKMETAEYNGQITGASL 570 580 590 >>gi|73984965|ref|XP_541755.2| PREDICTED: similar to nuc (633 aa) initn: 2309 init1: 2309 opt: 2309 Z-score: 2712.7 bits: 511.3 E(): 2.2e-142 Smith-Waterman score: 2309; 98.898% identity (100.000% similar) in 363 aa overlap (1-363:271-633) 10 20 30 mKIAA4 ARQTGLLDPGMLVNIQQPLIREDGTVLLAA :::::::::::::::::::::::::::::. gi|739 CAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLAT 250 260 270 280 290 300 40 50 60 70 80 90 mKIAA4 DSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 DSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTT 310 320 330 340 350 360 100 110 120 130 140 150 mKIAA4 DSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV ::.:::::::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|739 DSSSPPSLADGIDASGGGGIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV 370 380 390 400 410 420 160 170 180 190 200 210 mKIAA4 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI 430 440 450 460 470 480 220 230 240 250 260 270 mKIAA4 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP 490 500 510 520 530 540 280 290 300 310 320 330 mKIAA4 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 550 560 570 580 590 600 340 350 360 mKIAA4 TGLIGNVSIDSIIPYILKMETAEYNGQITGASL ::::::::::::::::::::::::::::::::: gi|739 TGLIGNVSIDSIIPYILKMETAEYNGQITGASL 610 620 630 >>gi|149728243|ref|XP_001491080.1| PREDICTED: nuclear re (596 aa) initn: 2299 init1: 2299 opt: 2299 Z-score: 2701.3 bits: 509.1 E(): 9.3e-142 Smith-Waterman score: 2299; 98.347% identity (100.000% similar) in 363 aa overlap (1-363:234-596) 10 20 30 mKIAA4 ARQTGLLDPGMLVNIQQPLIREDGTVLLAA :::::::::::::::::::::::::::::. gi|149 CAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLAT 210 220 230 240 250 260 40 50 60 70 80 90 mKIAA4 DSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTT 270 280 290 300 310 320 100 110 120 130 140 150 mKIAA4 DSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV ::.::::::::::.::::.::::::::::::::::::::::::::::::::::::::::: gi|149 DSSSPPSLADGIDTSGGGGIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV 330 340 350 360 370 380 160 170 180 190 200 210 mKIAA4 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI 390 400 410 420 430 440 220 230 240 250 260 270 mKIAA4 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP 450 460 470 480 490 500 280 290 300 310 320 330 mKIAA4 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 510 520 530 540 550 560 340 350 360 mKIAA4 TGLIGNVSIDSIIPYILKMETAEYNGQITGASL ::::::::::::::::::::::::::::::.:: gi|149 TGLIGNVSIDSIIPYILKMETAEYNGQITGTSL 570 580 590 >>gi|149728246|ref|XP_001491100.1| PREDICTED: nuclear re (611 aa) initn: 2299 init1: 2299 opt: 2299 Z-score: 2701.1 bits: 509.1 E(): 9.5e-142 Smith-Waterman score: 2299; 98.347% identity (100.000% similar) in 363 aa overlap (1-363:249-611) 10 20 30 mKIAA4 ARQTGLLDPGMLVNIQQPLIREDGTVLLAA :::::::::::::::::::::::::::::. gi|149 CAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLAT 220 230 240 250 260 270 40 50 60 70 80 90 mKIAA4 DSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTT 280 290 300 310 320 330 100 110 120 130 140 150 mKIAA4 DSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV ::.::::::::::.::::.::::::::::::::::::::::::::::::::::::::::: gi|149 DSSSPPSLADGIDTSGGGGIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV 340 350 360 370 380 390 160 170 180 190 200 210 mKIAA4 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI 400 410 420 430 440 450 220 230 240 250 260 270 mKIAA4 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP 460 470 480 490 500 510 280 290 300 310 320 330 mKIAA4 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 520 530 540 550 560 570 340 350 360 mKIAA4 TGLIGNVSIDSIIPYILKMETAEYNGQITGASL ::::::::::::::::::::::::::::::.:: gi|149 TGLIGNVSIDSIIPYILKMETAEYNGQITGTSL 580 590 600 610 >>gi|1351190|sp|P49116.1|NR2C2_HUMAN RecName: Full=Nucle (596 aa) initn: 2288 init1: 2288 opt: 2288 Z-score: 2688.4 bits: 506.7 E(): 4.9e-141 Smith-Waterman score: 2288; 98.072% identity (99.725% similar) in 363 aa overlap (1-363:234-596) 10 20 30 mKIAA4 ARQTGLLDPGMLVNIQQPLIREDGTVLLAA :::::::::::::::::::::::::::::. gi|135 CAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLAT 210 220 230 240 250 260 40 50 60 70 80 90 mKIAA4 DSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTT ::::::::::::::::::::::::::::::::.::.:::::::::::::::::::::::: gi|135 DSKAETSQGALGTLANVVTSLANLSESLNNGDTSEIQPEDQSASEITRAFDTLAKALNTT 270 280 290 300 310 320 100 110 120 130 140 150 mKIAA4 DSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV ::.: ::::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|135 DSSSSPSLADGIDTSGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNV 330 340 350 360 370 380 160 170 180 190 200 210 mKIAA4 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTI 390 400 410 420 430 440 220 230 240 250 260 270 mKIAA4 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 LAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP 450 460 470 480 490 500 280 290 300 310 320 330 mKIAA4 DHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 DHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFF 510 520 530 540 550 560 340 350 360 mKIAA4 TGLIGNVSIDSIIPYILKMETAEYNGQITGASL ::::::::::::::::::::::::::::::::: gi|135 TGLIGNVSIDSIIPYILKMETAEYNGQITGASL 570 580 590 363 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Tue Mar 17 19:00:05 2009 done: Tue Mar 17 19:06:19 2009 Total Scan time: 853.900 Total Display time: 0.100 Function used was FASTA [version 34.26.5 April 26, 2007]