# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg01294.fasta.nr -Q ../query/mKIAA0789.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0789, 224 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921286 sequences Expectation_n fit: rho(ln(x))= 5.0859+/-0.000182; mu= 9.5051+/- 0.010 mean_var=70.9717+/-13.726, 0's: 34 Z-trim: 35 B-trim: 0 in 0/66 Lambda= 0.152241 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|26340416|dbj|BAC33871.1| unnamed protein produc ( 195) 1267 286.5 1.9e-75 gi|148687998|gb|EDL19945.1| RIKEN cDNA C530024P05, ( 571) 901 206.5 6.9e-51 gi|149063651|gb|EDM13974.1| rCG21835, isoform CRA_ ( 151) 894 204.5 7.2e-51 gi|109497521|ref|XP_001080487.1| PREDICTED: simila ( 236) 877 201.0 1.3e-49 gi|149063650|gb|EDM13973.1| rCG21835, isoform CRA_ ( 572) 877 201.2 2.7e-49 gi|194214211|ref|XP_001497174.2| PREDICTED: simila ( 541) 745 172.2 1.4e-40 gi|73994833|ref|XP_543448.2| PREDICTED: similar to ( 564) 743 171.8 1.9e-40 gi|109098597|ref|XP_001101755.1| PREDICTED: simila ( 562) 740 171.1 3e-40 gi|83759171|gb|AAI10331.1| WSCD2 protein [Homo sap ( 565) 729 168.7 1.6e-39 gi|194374573|dbj|BAG57182.1| unnamed protein produ ( 565) 729 168.7 1.6e-39 gi|159155449|gb|AAI54933.1| LOC100127745 protein [ ( 230) 403 96.8 2.9e-18 gi|149478075|ref|XP_001512610.1| PREDICTED: simila ( 365) 349 85.1 1.5e-14 gi|47226482|emb|CAG08498.1| unnamed protein produc ( 565) 285 71.2 3.7e-10 gi|158706408|sp|A2BGL3.1|WSCD2_DANRE RecName: Full ( 572) 261 65.9 1.4e-08 >>gi|26340416|dbj|BAC33871.1| unnamed protein product [M (195 aa) initn: 1267 init1: 1267 opt: 1267 Z-score: 1510.8 bits: 286.5 E(): 1.9e-75 Smith-Waterman score: 1267; 100.000% identity (100.000% similar) in 195 aa overlap (30-224:1-195) 10 20 30 40 50 60 mKIAA0 EVPRSHALHAPSQPSTQPAPSEQVRNDPAMAKLWFKFQRCFRYFRRKPVRFFTLLAIYLT ::::::::::::::::::::::::::::::: gi|263 MAKLWFKFQRCFRYFRRKPVRFFTLLAIYLT 10 20 30 70 80 90 100 110 120 mKIAA0 AGSLVFLHSGFVGQPAVPQSQASPAAGSPVEGAELPFLGDLHLGRGFRDTVEASSIARRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 AGSLVFLHSGFVGQPAVPQSQASPAAGSPVEGAELPFLGDLHLGRGFRDTVEASSIARRY 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA0 GPTFKGKDTSERAKLGDYGGAWSRALKGRVVREKEKEKEEEKGKVLEGLRENTGTNVEIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 GPTFKGKDTSERAKLGDYGGAWSRALKGRVVREKEKEKEEEKGKVLEGLRENTGTNVEIT 100 110 120 130 140 150 190 200 210 220 mKIAA0 ATKLVSLLQTHVNVGTLDLSSIISESHSYSLIGKFHLNPTLALV :::::::::::::::::::::::::::::::::::::::::::: gi|263 ATKLVSLLQTHVNVGTLDLSSIISESHSYSLIGKFHLNPTLALV 160 170 180 190 >>gi|148687998|gb|EDL19945.1| RIKEN cDNA C530024P05, iso (571 aa) initn: 957 init1: 901 opt: 901 Z-score: 1069.9 bits: 206.5 E(): 6.9e-51 Smith-Waterman score: 901; 97.810% identity (99.270% similar) in 137 aa overlap (30-166:1-137) 10 20 30 40 50 60 mKIAA0 EVPRSHALHAPSQPSTQPAPSEQVRNDPAMAKLWFKFQRCFRYFRRKPVRFFTLLAIYLT ::::::::::::::::::::::::::::::: gi|148 MAKLWFKFQRCFRYFRRKPVRFFTLLAIYLT 10 20 30 70 80 90 100 110 120 mKIAA0 AGSLVFLHSGFVGQPAVPQSQASPAAGSPVEGAELPFLGDLHLGRGFRDTVEASSIARRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 AGSLVFLHSGFVGQPAVPQSQASPAAGSPVEGAELPFLGDLHLGRGFRDTVEASSIARRY 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA0 GPTFKGKDTSERAKLGDYGGAWSRALKGRVVREKEKEKEEEKGKVLEGLRENTGTNVEIT ::::::::::::::::::::::::::::::::::::::::::.: . gi|148 GPTFKGKDTSERAKLGDYGGAWSRALKGRVVREKEKEKEEEKAKYIGCYLDDTQSRALRG 100 110 120 130 140 150 190 200 210 220 mKIAA0 ATKLVSLLQTHVNVGTLDLSSIISESHSYSLIGKFHLNPTLALV gi|148 VSFFDYKKMTVFRCQDNCAERGYLYAGLEFGAECYCGHKIQAANVSESDCDMECKGERGS 160 170 180 190 200 210 >>gi|149063651|gb|EDM13974.1| rCG21835, isoform CRA_b [R (151 aa) initn: 951 init1: 490 opt: 894 Z-score: 1069.6 bits: 204.5 E(): 7.2e-51 Smith-Waterman score: 894; 89.404% identity (94.702% similar) in 151 aa overlap (30-179:1-151) 10 20 30 40 50 60 mKIAA0 EVPRSHALHAPSQPSTQPAPSEQVRNDPAMAKLWFKFQRCFRYFRRKPVRFFTLLAIYLT ::::::::::::::::::::::::::::::: gi|149 MAKLWFKFQRCFRYFRRKPVRFFTLLAIYLT 10 20 30 70 80 90 100 110 mKIAA0 AGSLVFLHSGFVGQPAVPQSQASPAAGSPVEG-AELPFLGDLHLGRGFRDTVEASSIARR :::::::::::::::.:::::::::::::.:: ::::::::::::::::::::::::::: gi|149 AGSLVFLHSGFVGQPSVPQSQASPAAGSPAEGGAELPFLGDLHLGRGFRDTVEASSIARR 40 50 60 70 80 90 120 130 140 150 160 170 mKIAA0 YGPTFKGKDTSERAKLGDYGGAWSRALKGRVVREKEKEKEEEKGKVLEGLRENTGTNVEI ::::::::::::::::::::::::::::::::::::::::::.:: : :. : .... gi|149 YGPTFKGKDTSERAKLGDYGGAWSRALKGRVVREKEKEKEEERGKSLGGFGVAGGGGTQM 100 110 120 130 140 150 180 190 200 210 220 mKIAA0 TATKLVSLLQTHVNVGTLDLSSIISESHSYSLIGKFHLNPTLALV >>gi|109497521|ref|XP_001080487.1| PREDICTED: similar to (236 aa) initn: 935 init1: 474 opt: 877 Z-score: 1046.7 bits: 201.0 E(): 1.3e-49 Smith-Waterman score: 877; 94.928% identity (98.551% similar) in 138 aa overlap (30-166:1-138) 10 20 30 40 50 60 mKIAA0 EVPRSHALHAPSQPSTQPAPSEQVRNDPAMAKLWFKFQRCFRYFRRKPVRFFTLLAIYLT ::::::::::::::::::::::::::::::: gi|109 MAKLWFKFQRCFRYFRRKPVRFFTLLAIYLT 10 20 30 70 80 90 100 110 mKIAA0 AGSLVFLHSGFVGQPAVPQSQASPAAGSPVEG-AELPFLGDLHLGRGFRDTVEASSIARR :::::::::::::::.:::::::::::::.:: ::::::::::::::::::::::::::: gi|109 AGSLVFLHSGFVGQPSVPQSQASPAAGSPAEGGAELPFLGDLHLGRGFRDTVEASSIARR 40 50 60 70 80 90 120 130 140 150 160 170 mKIAA0 YGPTFKGKDTSERAKLGDYGGAWSRALKGRVVREKEKEKEEEKGKVLEGLRENTGTNVEI ::::::::::::::::::::::::::::::::::::::::::..: . gi|109 YGPTFKGKDTSERAKLGDYGGAWSRALKGRVVREKEKEKEEERAKYIGCYLDDTQSRALR 100 110 120 130 140 150 180 190 200 210 220 mKIAA0 TATKLVSLLQTHVNVGTLDLSSIISESHSYSLIGKFHLNPTLALV gi|109 GVSFFDYKKMTVFRCQDNCAERGYLYAGLEFGAECYCGHKIQAANVSEADCDMDCKGERG 160 170 180 190 200 210 >>gi|149063650|gb|EDM13973.1| rCG21835, isoform CRA_a [R (572 aa) initn: 935 init1: 474 opt: 877 Z-score: 1041.4 bits: 201.2 E(): 2.7e-49 Smith-Waterman score: 877; 94.928% identity (98.551% similar) in 138 aa overlap (30-166:1-138) 10 20 30 40 50 60 mKIAA0 EVPRSHALHAPSQPSTQPAPSEQVRNDPAMAKLWFKFQRCFRYFRRKPVRFFTLLAIYLT ::::::::::::::::::::::::::::::: gi|149 MAKLWFKFQRCFRYFRRKPVRFFTLLAIYLT 10 20 30 70 80 90 100 110 mKIAA0 AGSLVFLHSGFVGQPAVPQSQASPAAGSPVEG-AELPFLGDLHLGRGFRDTVEASSIARR :::::::::::::::.:::::::::::::.:: ::::::::::::::::::::::::::: gi|149 AGSLVFLHSGFVGQPSVPQSQASPAAGSPAEGGAELPFLGDLHLGRGFRDTVEASSIARR 40 50 60 70 80 90 120 130 140 150 160 170 mKIAA0 YGPTFKGKDTSERAKLGDYGGAWSRALKGRVVREKEKEKEEEKGKVLEGLRENTGTNVEI ::::::::::::::::::::::::::::::::::::::::::..: . gi|149 YGPTFKGKDTSERAKLGDYGGAWSRALKGRVVREKEKEKEEERAKYIGCYLDDTQSRALR 100 110 120 130 140 150 180 190 200 210 220 mKIAA0 TATKLVSLLQTHVNVGTLDLSSIISESHSYSLIGKFHLNPTLALV gi|149 GVSFFDYKKMTVFRCQDNCAERGYLYAGLEFGAECYCGHKIQAANVSEADCDMDCKGERG 160 170 180 190 200 210 >>gi|194214211|ref|XP_001497174.2| PREDICTED: similar to (541 aa) initn: 774 init1: 676 opt: 745 Z-score: 885.1 bits: 172.2 E(): 1.4e-40 Smith-Waterman score: 745; 70.122% identity (84.146% similar) in 164 aa overlap (30-193:1-161) 10 20 30 40 50 60 mKIAA0 EVPRSHALHAPSQPSTQPAPSEQVRNDPAMAKLWFKFQRCFRYFRRKPVRFFTLLAIYLT :::::::::: .::::::::::.:..::: gi|194 MAKLWFKFQR---HFRRKPVRFFTFLVLYLT 10 20 70 80 90 100 110 120 mKIAA0 AGSLVFLHSGFVGQPAVPQSQASPAAGSPVEGAELPFLGDLHLGRGFRDTVEASSIARRY ::::::::::::::::: :.::.:::: :.:::::::::::::::::::. ::::::::: gi|194 AGSLVFLHSGFVGQPAVSQNQANPAAGVPAEGAELPFLGDLHLGRGFRDAGEASSIARRY 30 40 50 60 70 80 130 140 150 160 170 180 mKIAA0 GPTFKGKDTSERAKLGDYGGAWSRALKGRVVREKEKEKEEEKGKVLEGLRENTGTNVEIT :: ::::: .:::::::::::::::::::::::::.:. . : :. . . .: . gi|194 GPWFKGKDGNERAKLGDYGGAWSRALKGRVVREKEEERAKYIGCYLDDTQSRALRGVSFF 90 100 110 120 130 140 190 200 210 220 mKIAA0 ATKLVSLLQTHVNVGTLDLSSIISESHSYSLIGKFHLNPTLALV : ..... . : gi|194 DYKKMTIFRCQDNCAERLPPEEPSWFWRMPEAAVGKRAEQGWSYTRPSVPIPWNRNGSAV 150 160 170 180 190 200 >>gi|73994833|ref|XP_543448.2| PREDICTED: similar to CG9 (564 aa) initn: 781 init1: 693 opt: 743 Z-score: 882.4 bits: 171.8 E(): 1.9e-40 Smith-Waterman score: 743; 69.512% identity (84.146% similar) in 164 aa overlap (30-193:1-161) 10 20 30 40 50 60 mKIAA0 EVPRSHALHAPSQPSTQPAPSEQVRNDPAMAKLWFKFQRCFRYFRRKPVRFFTLLAIYLT :::::..::: :::::::::::.:..::: gi|739 MAKLWLRFQR---YFRRKPVRFFTFLVLYLT 10 20 70 80 90 100 110 120 mKIAA0 AGSLVFLHSGFVGQPAVPQSQASPAAGSPVEGAELPFLGDLHLGRGFRDTVEASSIARRY ::::::::::::::::: :.:::::.: :.:::::::::::::::::::: .:::::::: gi|739 AGSLVFLHSGFVGQPAVSQGQASPAVGVPAEGAELPFLGDLHLGRGFRDTGDASSIARRY 30 40 50 60 70 80 130 140 150 160 170 180 mKIAA0 GPTFKGKDTSERAKLGDYGGAWSRALKGRVVREKEKEKEEEKGKVLEGLRENTGTNVEIT :: ::::: ::::::::::::::::::::.:::::.:. . : :. . . .: . gi|739 GPWFKGKDGSERAKLGDYGGAWSRALKGRIVREKEEERAKYIGCYLDDTQSRALRGVSFF 90 100 110 120 130 140 190 200 210 220 mKIAA0 ATKLVSLLQTHVNVGTLDLSSIISESHSYSLIGKFHLNPTLALV : ..... . : gi|739 DYKKMTIFRCQDNCAERGYLYAGLEFGAECYCGHKIQATNVSEAECDMGCKGERGSVCGG 150 160 170 180 190 200 >>gi|109098597|ref|XP_001101755.1| PREDICTED: similar to (562 aa) initn: 714 init1: 442 opt: 740 Z-score: 878.9 bits: 171.1 E(): 3e-40 Smith-Waterman score: 740; 70.303% identity (83.636% similar) in 165 aa overlap (30-193:1-162) 10 20 30 40 50 60 mKIAA0 EVPRSHALHAPSQPSTQPAPSEQVRNDPAMAKLWFKFQRCFRYFRRKPVRFFTLLAIYLT :::::::::: :::::::::::.::.::: gi|109 MAKLWFKFQR---YFRRKPVRFFTFLALYLT 10 20 70 80 90 100 110 mKIAA0 AGSLVFLHSGFVGQPAVPQSQASPAA-GSPVEGAELPFLGDLHLGRGFRDTVEASSIARR ::::::::::::::::: .::.::: :.:.::::::::::.::::::::: :::::::: gi|109 AGSLVFLHSGFVGQPAVSGNQANPAAAGGPAEGAELPFLGDMHLGRGFRDTGEASSIARR 30 40 50 60 70 80 120 130 140 150 160 170 mKIAA0 YGPTFKGKDTSERAKLGDYGGAWSRALKGRVVREKEKEKEEEKGKVLEGLRENTGTNVEI ::: ::::: .:::::::::::::::::::::::::.:. . : :. . . .: . gi|109 YGPWFKGKDGNERAKLGDYGGAWSRALKGRVVREKEEERAKYIGCYLDDTQSRALRGVSF 90 100 110 120 130 140 180 190 200 210 220 mKIAA0 TATKLVSLLQTHVNVGTLDLSSIISESHSYSLIGKFHLNPTLALV : ..... . : gi|109 FDYKKMTIFRCQDNCAERGYLYAGLEFGAECYCGHKIQATNVSEAECDMECKGERGSVCG 150 160 170 180 190 200 >>gi|83759171|gb|AAI10331.1| WSCD2 protein [Homo sapiens (565 aa) initn: 703 init1: 431 opt: 729 Z-score: 865.8 bits: 168.7 E(): 1.6e-39 Smith-Waterman score: 729; 69.697% identity (83.030% similar) in 165 aa overlap (30-193:1-162) 10 20 30 40 50 60 mKIAA0 EVPRSHALHAPSQPSTQPAPSEQVRNDPAMAKLWFKFQRCFRYFRRKPVRFFTLLAIYLT :::::::::: :::::::::::.::.::: gi|837 MAKLWFKFQR---YFRRKPVRFFTFLALYLT 10 20 70 80 90 100 110 mKIAA0 AGSLVFLHSGFVGQPAVPQSQASPAA-GSPVEGAELPFLGDLHLGRGFRDTVEASSIARR ::::::::::::::::: .::.::: :.:.::::: ::::.::::::::: :::::::: gi|837 AGSLVFLHSGFVGQPAVSGNQANPAAAGGPAEGAELSFLGDMHLGRGFRDTGEASSIARR 30 40 50 60 70 80 120 130 140 150 160 170 mKIAA0 YGPTFKGKDTSERAKLGDYGGAWSRALKGRVVREKEKEKEEEKGKVLEGLRENTGTNVEI ::: ::::: .:::::::::::::::::::::::::.:. . : :. . . .: . gi|837 YGPWFKGKDGNERAKLGDYGGAWSRALKGRVVREKEEERAKYIGCYLDDTQSRALRGVSF 90 100 110 120 130 140 180 190 200 210 220 mKIAA0 TATKLVSLLQTHVNVGTLDLSSIISESHSYSLIGKFHLNPTLALV : ..... . : gi|837 FDYKKMTIFRCQDNCAERGYLYGGLEFGAECYCGHKIQATNVSEAECDMECKGERGSVCG 150 160 170 180 190 200 >>gi|194374573|dbj|BAG57182.1| unnamed protein product [ (565 aa) initn: 703 init1: 431 opt: 729 Z-score: 865.8 bits: 168.7 E(): 1.6e-39 Smith-Waterman score: 729; 69.697% identity (83.030% similar) in 165 aa overlap (30-193:1-162) 10 20 30 40 50 60 mKIAA0 EVPRSHALHAPSQPSTQPAPSEQVRNDPAMAKLWFKFQRCFRYFRRKPVRFFTLLAIYLT :::::::::: :::::::::::.::.::: gi|194 MAKLWFKFQR---YFRRKPVRFFTFLALYLT 10 20 70 80 90 100 110 mKIAA0 AGSLVFLHSGFVGQPAVPQSQASPAA-GSPVEGAELPFLGDLHLGRGFRDTVEASSIARR ::::::::::::::::: .::.::: :.:.::::: ::::.::::::::: :::::::: gi|194 AGSLVFLHSGFVGQPAVSGNQANPAAAGGPAEGAELSFLGDMHLGRGFRDTGEASSIARR 30 40 50 60 70 80 120 130 140 150 160 170 mKIAA0 YGPTFKGKDTSERAKLGDYGGAWSRALKGRVVREKEKEKEEEKGKVLEGLRENTGTNVEI ::: ::::: .:::::::::::::::::::::::::.:. . : :. . . .: . gi|194 YGPWFKGKDGNERAKLGDYGGAWSRALKGRVVREKEEERAKYIGCYLDDTQSRALRGVSF 90 100 110 120 130 140 180 190 200 210 220 mKIAA0 TATKLVSLLQTHVNVGTLDLSSIISESHSYSLIGKFHLNPTLALV : ..... . : gi|194 FDYKKMTIFRCQDNCAERGYLYGGLEFGAECYCGHKIQATNVSEAECDMECKGERGSVCG 150 160 170 180 190 200 224 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Mon Mar 16 10:32:03 2009 done: Mon Mar 16 10:37:04 2009 Total Scan time: 710.950 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]