FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0998.ptfa, 1333 aa
 vs ./tmplib.26680 library

1767684 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.2086+/-0.00634; mu= 2.7731+/- 0.421
 mean_var=227.0899+/-55.004, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.0851

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0173  ( 934 res)   mpf00222                   ( 934) 1060  144 1.2e-34


>>mKIAA0173  ( 934 res)   mpf00222                        (934 aa)
 initn: 470 init1: 415 opt: 1060  Z-score: 714.3  bits: 144.0 E(): 1.2e-34
Smith-Waterman score: 1060;  36.381% identity (38.538% ungapped) in 536 aa overlap (2-524:280-798)

                                            10        20        30 
mKIAA0                              QTPKEMPVVMARDLEETASSSEDEDLANQED
                                     .:.:  ....:.  .  :.:    : :.: 
mKIAA0 ELGDGLEDSCSHDENEEEEGDSECSSLSVVSPSESVALISRNCVDLMSKS----LPNHEK
     250       260       270       280       290           300     

                40        50        60          70        80       
mKIAA0 --HPCIMWTGGCRRIPVLVFHAEAILTKDNNIRVIG--ERYHLSYKIVRTDSRLVRSILT
         .: ....      :.. :      :.:. .. .   .:  : .:.  .   .:.. . 
mKIAA0 VVRPALIYSLFPNVTPTIYFG-----TRDERVEKLPWEQRRLLRWKMSTVTPNIVKQTIG
         310       320            330       340       350       360

        90       100       110       120       130       140       
mKIAA0 AHGFHEVHPSSTDYNLMWTGSHLKPFLLRTLSEAQKVNHFPRSYELTRKDRLYKNIIRMQ
          : ..   . :.   : : :.:   .:.. : ::.:::: :... :::::..:. :::
mKIAA0 RSHF-KISKRNDDWLGCW-GHHMKSPGFRSIREHQKLNHFPGSFQIGRKDRLWRNLSRMQ
               370        380       390       400       410        

       150       160       170        180       190       200      
mKIAA0 HTHGFKAFHILPQTFLLPAEYAEFCNSY-SKDRGPWIVKPVASSRGRGVYLINNPNQISL
          : : : ..::.:.:: .   . ... :..:  ::::: ::.:: :. .:.. .:.  
mKIAA0 SRFGKKEFSFFPQSFILPQDSKLLRKAWESSSRQKWIVKPPASARGIGIQVIHKWSQLPK
      420       430       440       450       460       470        

        210       220       230       240       250       260      
mKIAA0 EENILVSRYINNPLLIDDFKFDVRLYVLVTSYDPLVIYLYEEGLARFATVRYDQGSKNIR
       .. .::.::...: ::.  :::.:.:: ::::::: :::. .::.:::. .:. . :.. 
mKIAA0 RRPLLVQRYLHKPYLISGSKFDLRIYVYVTSYDPLRIYLFSDGLVRFASCKYSPSMKSLS
      480       490       500       510       520       530        

        270       280       290       300       310       320      
mKIAA0 NQFMHLTNYSVNKKSGDYVSCDDPEVEDYGNKWSMSAMLRYLKQEGKDTTALMAHVEDLI
       :.::::::::::::. .: .  : :.   :.::...:.  ::.:.: .. :.  ...:..
mKIAA0 NKFMHLTNYSVNKKNTEYQANAD-ETACQGHKWALKALWNYLSQKGINSDAIWEKIKDVV
      540       550       560        570       580       590       

        330       340       350       360       370       380      
mKIAA0 IKTIISAELAIATACKTFVPHRSSCFELYGFDVLIDNTLKPWLLEVNLSPSLACDAPLDL
       .:::::.:  ...  : .: .  :: ::.:::...:..::::.::::.::::  ..:::.
mKIAA0 VKTIISSEPYVTNLLKLYVRRPYSCHELFGFDIMLDENLKPWVLEVNISPSLHSNSPLDI
       600       610       620       630       640       650       

        390       400       410       420            430       440 
mKIAA0 KIKASMISDMFTVVGFVCQDPAQRTSNRSIYPSFESSRR-----NPFQKPQRTRPLSASD
       .::..:: :.....:::  .  .  :. :  ::  :.       .: .: : : :   . 
mKIAA0 SIKGQMIRDLLNLAGFVLPNMEDIISSSS-SPSSSSGSSTSLPSSPRDKCQMT-PEHFTA
       660       670       680        690       700        710     

             450        460        470       480       490         
mKIAA0 AEMKNLVASAREKVPGK-LGGSVLG-LSMEEIKVLRRVKEENDRRGGFIRIFPTSETWEI
        .::. .    .:.: . . .:::  :. ....:: ....: .::: : ::::.  . . 
mKIAA0 QKMKK-AYYLTQKIPDQDFYASVLDVLTPDDVRVLVEMEDEFSRRGQFERIFPSRISSR-
         720        730       740       750       760       770    

     500       510       520        530       540       550        
mKIAA0 YGSYLEHKTSMNYMLATRLFQD-RGNPRRSLLTGRARVSTEGAPELKVESMNSKAKLHAA
       :  ..:.   .: .:.:.  :  .::                                  
mKIAA0 YLRFFEQPRYFN-ILTTQWEQKYHGNKLKGVDLLRNWCYKGFHTGIVSDSAPLWSLPTSL
           780        790       800       810       820       830  




1333 residues in 1 query   sequences
1767684 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:33:38 2006 done: Mon Mar 27 10:33:39 2006
 Scan time:  1.170 Display time:  0.050

Function used was FASTA [version 3.4t11 Apr 17, 2002]