FASTA searches a protein or DNA sequence data bank
version 3.4t11 Apr 17, 2002
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
../query/mKIAA1239.ptfa, 1174 aa
vs ./tmplib.26680 library
1767843 residues in 2168 sequences
Expectation_n fit: rho(ln(x))= 4.2069+/-0.00415; mu= 19.7489+/- 0.278
mean_var=80.5608+/-18.198, 0's: 0 Z-trim: 9 B-trim: 0 in 0/36
Lambda= 0.1429
FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 39, opt: 27, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2168)
mKIAA4167 ( 342 res) mpj04828 ( 342) 159 43 9.3e-05
mKIAA4123 ( 639 res) mbg05860 ( 639) 147 41 0.00075
>>mKIAA4167 ( 342 res) mpj04828 (342 aa)
initn: 100 init1: 100 opt: 159 Z-score: 177.8 bits: 43.1 E(): 9.3e-05
Smith-Waterman score: 183; 20.463% identity (22.176% ungapped) in 259 aa overlap (614-856:84-338)
590 600 610 620 630
mKIAA1 DTAQEMVMVDSEGSLSVWNTEDISNPQLTEDFDCRK----EDSEVVSIELSEDQSAIL-I
: .:.: .. :. .. : :.: ..
mKIAA4 AAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSDSSRLVSA
60 70 80 90 100 110
640 650 660 670 680 690
mKIAA1 CKALSIELLDTSMWKVAEKFRARHNERFVSAVLSKNGDCIIATMENTPAVFFWRRDTGQC
.... : : . ... :.. :: . . .:.. .: .:. ::.:
mKIAA4 SDDKTLKVWDMRSGKCLKTLKG-HSD-FVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKC
120 130 140 150 160 170
700 710 720 730 740 750
mKIAA1 LASLQESSGTIVKLVKSSHHNMLLSLSTSGVLSIWDIDIITAMSNIDKTGKPIQSLV-LP
: .:. : : . . . ....: : .:. ::: . .. :.: :.: .
mKIAA4 LKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFS
180 190 200 210 220 230
760 770 780 790 800 810
mKIAA1 ARGEIIYSLDGSDCVHKWNFSSGFIEAVFKHEGIVEHCVLTS---TGDLMVTSDDKSSQ-
:. : . .. .. :..: : .. . ..:...: :: :.: .....
mKIAA4 PNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMV
240 250 260 270 280 290
820 830 840 850 860
mKIAA1 YVWHTSSGENLFRINGQRISQLLIT---HNDQFVVS---LCEENASRVWRLATGHRVCNI
:.:. .. : . :..:. ....:. : . ... : .... .::
mKIAA4 YIWNLQTKEIVQRLQGH--TDVVISAACHPTKNIIASAALENDKTIKVWSSDC
300 310 320 330 340
870 880 890 900 910 920
mKIAA1 LTTLQNAFITSANTFVVGMTKSKVLAVSLWTGSITKKFCCEDGITIVNFKLIPDCPDVIV
>>mKIAA4123 ( 639 res) mbg05860 (639 aa)
initn: 133 init1: 66 opt: 147 Z-score: 161.5 bits: 41.0 E(): 0.00075
Smith-Waterman score: 150; 20.732% identity (21.983% ungapped) in 246 aa overlap (617-858:332-567)
590 600 610 620 630 640
mKIAA1 QEMVMVDSEGSLSVWNTEDISNPQLTEDFDCRKEDSEVVSIELSEDQSAILICKALSIEL
::.: :. : .::. . . .:..
mKIAA4 YRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKI
310 320 330 340 350 360
650 660 670 680 690 700
mKIAA1 LDTSMWKVAEKFRARHNERFVSAVLSKNGDCIIATMENTPAVFFWRRDTGQCLASLQESS
: : . ... . :. :.. . . .: : . .: : ..:. : .: .
mKIAA4 WDKSTLEC-KRILTGHTG---SVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHC
370 380 390 400 410
710 720 730 740 750 760
mKIAA1 GTIVKLVKSSHHNMLLSLSTSGVLSIWDIDIITAMSNIDK--TGKPIQSLVLPARGEIIY
....: ...:... : . ...::. : .. . . .:. :. . :
mKIAA4 EAVLHL--RFNNGMMVTCSKDRSIAVWDMASPTDIT-LRRVLVGHRAAVNVVDFDDKYIV
420 430 440 450 460 470
770 780 790 800 810 820
mKIAA1 SLDGSDCVHKWNFSSG-FIEAVFKHE-GIVEHCVLTSTGDLMVTSDDKSSQYVWHTSSGE
: .:. .. :: :. :.... :. ::. : : :.:.... .. .: :
mKIAA4 SASGDRTIKVWNTSTCEFVRTLNGHKRGIA--C-LQYRDRLVVSGSSDNTIRLWDIECGA
480 490 500 510 520 530
830 840 850 860 870 880
mKIAA1 NLFRINGQRISQLLITHNDQFVVSLCEENASRVWRLATGHRVCNILTTLQNAFITSANTF
: ..:.. : ... .:: .. .:: :
mKIAA4 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGR
540 550 560 570 580 590
890 900 910 920 930 940
mKIAA1 VVGMTKSKVLAVSLWTGSITKKFCCEDGITIVNFKLIPDCPDVIVFITSAETVNLWSLTD
mKIAA4 VFRLQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPSRTYTYISR
600 610 620 630
1174 residues in 1 query sequences
1767843 residues in 2168 library sequences
Scomplib [34t11]
start: Mon Mar 27 10:39:04 2006 done: Mon Mar 27 10:39:05 2006
Scan time: 1.090 Display time: 0.060
Function used was FASTA [version 3.4t11 Apr 17, 2002]