FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1239.ptfa, 1174 aa vs ./tmplib.26680 library 1767843 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.2069+/-0.00415; mu= 19.7489+/- 0.278 mean_var=80.5608+/-18.198, 0's: 0 Z-trim: 9 B-trim: 0 in 0/36 Lambda= 0.1429 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4167 ( 342 res) mpj04828 ( 342) 159 43 9.3e-05 mKIAA4123 ( 639 res) mbg05860 ( 639) 147 41 0.00075 >>mKIAA4167 ( 342 res) mpj04828 (342 aa) initn: 100 init1: 100 opt: 159 Z-score: 177.8 bits: 43.1 E(): 9.3e-05 Smith-Waterman score: 183; 20.463% identity (22.176% ungapped) in 259 aa overlap (614-856:84-338) 590 600 610 620 630 mKIAA1 DTAQEMVMVDSEGSLSVWNTEDISNPQLTEDFDCRK----EDSEVVSIELSEDQSAIL-I : .:.: .. :. .. : :.: .. mKIAA4 AAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSDSSRLVSA 60 70 80 90 100 110 640 650 660 670 680 690 mKIAA1 CKALSIELLDTSMWKVAEKFRARHNERFVSAVLSKNGDCIIATMENTPAVFFWRRDTGQC .... : : . ... :.. :: . . .:.. .: .:. ::.: mKIAA4 SDDKTLKVWDMRSGKCLKTLKG-HSD-FVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKC 120 130 140 150 160 170 700 710 720 730 740 750 mKIAA1 LASLQESSGTIVKLVKSSHHNMLLSLSTSGVLSIWDIDIITAMSNIDKTGKPIQSLV-LP : .:. : : . . . ....: : .:. ::: . .. :.: :.: . mKIAA4 LKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFS 180 190 200 210 220 230 760 770 780 790 800 810 mKIAA1 ARGEIIYSLDGSDCVHKWNFSSGFIEAVFKHEGIVEHCVLTS---TGDLMVTSDDKSSQ- :. : . .. .. :..: : .. . ..:...: :: :.: ..... mKIAA4 PNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMV 240 250 260 270 280 290 820 830 840 850 860 mKIAA1 YVWHTSSGENLFRINGQRISQLLIT---HNDQFVVS---LCEENASRVWRLATGHRVCNI :.:. .. : . :..:. ....:. : . ... : .... .:: mKIAA4 YIWNLQTKEIVQRLQGH--TDVVISAACHPTKNIIASAALENDKTIKVWSSDC 300 310 320 330 340 870 880 890 900 910 920 mKIAA1 LTTLQNAFITSANTFVVGMTKSKVLAVSLWTGSITKKFCCEDGITIVNFKLIPDCPDVIV >>mKIAA4123 ( 639 res) mbg05860 (639 aa) initn: 133 init1: 66 opt: 147 Z-score: 161.5 bits: 41.0 E(): 0.00075 Smith-Waterman score: 150; 20.732% identity (21.983% ungapped) in 246 aa overlap (617-858:332-567) 590 600 610 620 630 640 mKIAA1 QEMVMVDSEGSLSVWNTEDISNPQLTEDFDCRKEDSEVVSIELSEDQSAILICKALSIEL ::.: :. : .::. . . .:.. mKIAA4 YRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKI 310 320 330 340 350 360 650 660 670 680 690 700 mKIAA1 LDTSMWKVAEKFRARHNERFVSAVLSKNGDCIIATMENTPAVFFWRRDTGQCLASLQESS : : . ... . :. :.. . . .: : . .: : ..:. : .: . mKIAA4 WDKSTLEC-KRILTGHTG---SVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHC 370 380 390 400 410 710 720 730 740 750 760 mKIAA1 GTIVKLVKSSHHNMLLSLSTSGVLSIWDIDIITAMSNIDK--TGKPIQSLVLPARGEIIY ....: ...:... : . ...::. : .. . . .:. :. . : mKIAA4 EAVLHL--RFNNGMMVTCSKDRSIAVWDMASPTDIT-LRRVLVGHRAAVNVVDFDDKYIV 420 430 440 450 460 470 770 780 790 800 810 820 mKIAA1 SLDGSDCVHKWNFSSG-FIEAVFKHE-GIVEHCVLTSTGDLMVTSDDKSSQYVWHTSSGE : .:. .. :: :. :.... :. ::. : : :.:.... .. .: : mKIAA4 SASGDRTIKVWNTSTCEFVRTLNGHKRGIA--C-LQYRDRLVVSGSSDNTIRLWDIECGA 480 490 500 510 520 530 830 840 850 860 870 880 mKIAA1 NLFRINGQRISQLLITHNDQFVVSLCEENASRVWRLATGHRVCNILTTLQNAFITSANTF : ..:.. : ... .:: .. .:: : mKIAA4 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGR 540 550 560 570 580 590 890 900 910 920 930 940 mKIAA1 VVGMTKSKVLAVSLWTGSITKKFCCEDGITIVNFKLIPDCPDVIVFITSAETVNLWSLTD mKIAA4 VFRLQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPSRTYTYISR 600 610 620 630 1174 residues in 1 query sequences 1767843 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:39:04 2006 done: Mon Mar 27 10:39:05 2006 Scan time: 1.090 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]