FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4254.ptfa, 933 aa vs ./tmplib.26680 library 1768084 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.4849+/-0.00504; mu= 19.6448+/- 0.338 mean_var=118.0456+/-26.583, 0's: 0 Z-trim: 18 B-trim: 0 in 0/36 Lambda= 0.1180 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0846 ( 693 res) mfj18276 ( 693) 236 52 3.1e-07 mKIAA1124 ( 1086 res) mfj36158 (1086) 184 43 0.00018 mKIAA4186 ( 899 res) mfj00029 ( 899) 166 40 0.0014 mKIAA4165 ( 674 res) mfj42151 ( 674) 160 39 0.0024 mKIAA0538 ( 826 res) msh37311 ( 826) 157 39 0.0039 >>mKIAA0846 ( 693 res) mfj18276 (693 aa) initn: 216 init1: 216 opt: 236 Z-score: 222.1 bits: 52.0 E(): 3.1e-07 Smith-Waterman score: 236; 44.615% identity (46.032% ungapped) in 65 aa overlap (126-188:497-561) 100 110 120 130 140 150 mKIAA4 RTSLKDEELKSHVYKKTLQALIYPISCTTPHNFEVWSATTPTYCYECEGLLWGLARQGMR :::. . ::.: .: :.:::. .::.. mKIAA0 QDGLISKDEMMAYFLRAKSQLHCKMGPGFIHNFQEMNYLKPTFCEHCAGFLWGIIKQGYK 470 480 490 500 510 520 160 170 180 190 200 210 mKIAA4 CSECGVKCHEKCQDLLNADC--LQRAAEKSSKHGAEDRTQNIIMAMKDRMKIRERNKPEI :..::..::..:.::: : : :: ::. :. mKIAA0 CKDCGANCHKQCKDLLVLACRRLARAPSLSSNPGSLPGSPALPPVQDEVFEFPGVTAGHR 530 540 550 560 570 580 220 230 240 250 260 270 mKIAA4 FEVIRDVFTVSKVAHVQQMKTVKQSVLDGTSKWSAKITITVVCAQGLQAKDKTGSSDPYV mKIAA0 DLDSRAITLVTGSSRKISVRLQRATTSQATQTEPVWSEAVWGDSGSHTFPKMKSKFHDKA 590 600 610 620 630 640 >>mKIAA1124 ( 1086 res) mfj36158 (1086 aa) initn: 191 init1: 163 opt: 184 Z-score: 172.4 bits: 43.4 E(): 0.00018 Smith-Waterman score: 185; 27.703% identity (30.827% ungapped) in 148 aa overlap (72-205:332-478) 50 60 70 80 90 mKIAA4 PSLPQWLPEGPAGGLYGIDSMPDLRRKKPLPLVSDLAMSL-------VQSRKAGITSAMA ::. ::.. .:. : .. ... mKIAA1 RKRMEEKFRADTGLKLPDFQDSIFEYFNTAPLAHDLTFRTSSASDQETQASKMDLSPSVS 310 320 330 340 350 360 100 110 120 130 140 mKIAA4 TRTSLKDEE-------LKSHVYKKTLQALIYPISCTTPHNFEVWSATTPTYCYECEGLLW . :: ...: : : . ::: . :.: . : .:: : .: .:. mKIAA1 VATSTEQQEDMARPQQRPSPVPLPSTQALAMAGPKPKAHQFSIKSFPSPTQCSHCTSLMV 370 380 390 400 410 420 150 160 170 180 190 200 mKIAA4 GLARQGMRCSECGVKCHEKCQDLLNADCLQRAAEKSSKHGAEDRTQNIIMAMKDRMKIRE :: :::. : :. .:: .:.: : :.:.. . : ..: :.: .:. mKIAA1 GLIRQGYACEVCAFSCHVSCKDSAPQVC-PIPPEQSKRPLGVDVQRGIGTAYKGYVKVPK 430 440 450 460 470 480 210 220 230 240 250 260 mKIAA4 RNKPEIFEVIRDVFTVSKVAHVQQMKTVKQSVLDGTSKWSAKITITVVCAQGLQAKDKTG mKIAA1 PTGVKKGWQRAYAVVCDCKLFLYDLPEGKSTQPGVVASQVLDLRDEEFAVSSVLASDVIH 490 500 510 520 530 540 >>mKIAA4186 ( 899 res) mfj00029 (899 aa) initn: 200 init1: 135 opt: 166 Z-score: 156.6 bits: 40.2 E(): 0.0014 Smith-Waterman score: 178; 31.061% identity (37.963% ungapped) in 132 aa overlap (250-374:320-434) 220 230 240 250 260 270 mKIAA4 VFTVSKVAHVQQMKTVKQSVLDGTSKWSAKITITVVCAQGLQAKDKT----GSSDPYVTV : . .. :. : ::. :.::::. : mKIAA4 AHLVLPNRVTVPVKKGLDVTNLRVPLPCGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKV 290 300 310 320 330 340 280 290 300 310 320 330 mKIAA4 QVGKTKKRTKTIFGNLNPVWEEKFHFECHNSSDR-IKVRVWDEDDDIKSRVKQRLKRESD ..: . :..::. ::::.:.: :.: .. . ..: ..::: : .: mKIAA4 SIGLQHCRSRTIYKNLNPTWNEVFEFMVYEVPGQDLEVDLYDEDTD------------KD 350 360 370 380 390 340 350 360 370 380 390 mKIAA4 DFLGQTIIEVRTLSGE--MDVWYNLEKRTDKSAVSGAIRLQISVEIKGEEKVAPYHVQYT ::::. : . . . .: :. :. : :: ..:.. mKIAA4 DFLGSLQICLGDVMKNRVVDEWFALNDTT-----SGRLHLRLEWLSLLTDQEALTENDSG 400 410 420 430 440 450 400 410 420 430 440 450 mKIAA4 CLHENLFHYLTDIQGSGGVWIPEARGDDAWKVYFDETAQEIVDEFAMRYGIESIYQAMTH mKIAA4 LSTAILVVFLENACNLPRNPFDYLNGEYRAKKLSRFVKNKASRDPSSYVKLTVGKKTFTS 460 470 480 490 500 510 >>mKIAA4165 ( 674 res) mfj42151 (674 aa) initn: 121 init1: 121 opt: 160 Z-score: 152.3 bits: 39.0 E(): 0.0024 Smith-Waterman score: 160; 33.333% identity (33.333% ungapped) in 54 aa overlap (122-175:216-269) 100 110 120 130 140 150 mKIAA4 AMATRTSLKDEELKSHVYKKTLQALIYPISCTTPHNFEVWSATTPTYCYECEGLLWGLAR :.. :.:.. . ..: : .:::.: mKIAA4 PCVPERPGMPCPGEDKSIYRRGARRWRKLYCANGHTFQAKRFNRRAHCAICTDRIWGLGR 190 200 210 220 230 240 160 170 180 190 200 210 mKIAA4 QGMRCSECGVKCHEKCQDLLNADCLQRAAEKSSKHGAEDRTQNIIMAMKDRMKIRERNKP ::..: .: . :.::. :.. .: mKIAA4 QGYKCINCKLLVHKKCHKLVTIECGRHSLPPEPMMPMDQTMHPDHTQTVIPYNPSSHESL 250 260 270 280 290 300 >>mKIAA0538 ( 826 res) msh37311 (826 aa) initn: 123 init1: 123 opt: 157 Z-score: 148.7 bits: 38.7 E(): 0.0039 Smith-Waterman score: 201; 26.087% identity (30.901% ungapped) in 276 aa overlap (209-461:120-375) 180 190 200 210 220 230 mKIAA4 AAEKSSKHGAEDRTQNIIMAMKDRMKIRERNKPEIFEVIRDVFTVSKVAHVQQMKTVKQS ..:. : . :. .:: .. mKIAA0 HTVAFYVMDEDALSRDDVIGKVCLTRDALASHPKGFSGWTHLVEVDPNEEVQGEIHLRLE 90 100 110 120 130 140 240 250 260 270 280 290 mKIAA4 VLDGTSKWSAKITITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIFGNLNPVWEEK :. :. .... .:. :. : ::..:.:::.: :. . ..:... . : :.: mKIAA0 VVPGVH--ASRLRCAVLEARDLAPKDRNGASDPFVRVHYNGRTQETSVVKKSCYPRWNET 150 160 170 180 190 200 300 310 320 330 340 350 mKIAA4 FHFECHN-SSDRIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTLSG--EMDVWY : :: .. .:. . :..:: : :.: .::::.....:. : . . . :. mKIAA0 FDFELEKGASEALLVEAWDWD-----LVSQ------NDFLGKVVVNVQRLCSAQQEEGWF 210 220 230 240 250 360 370 380 390 400 mKIAA4 NLEKRTDKSAVS-GAI-RLQISVEIKGEEKVAP---YH--VQYTCLHENLFHYLTDIQGS :. .:: . : . ::. :... .: : : :. :: : . .: :: mKIAA0 RLQPDQSKSRQGKGNLGSLQLEVRLR-DETVLPSVCYQPLVQLLCQEVKL-----GTQGP 260 270 280 290 300 310 410 420 430 440 450 mKIAA4 GGVWIP--------EARGDDA---WKVYFDE-TAQEIVDE-FAMRYGIESIYQAMTHFAC : . :: : : . : :... . :....: : .. : : ... . mKIAA0 GRL-IPVIEETTSAECRQEVATTLLKLFLGQGLAKDFLDLLFQLELGRTSEANTLFRSNS 320 330 340 350 360 460 470 480 490 500 510 mKIAA4 LSSKYMCPGVPAVMSTLLANINAYYAHTTASTNVSASDRFAASNFGKERFVKLLDQLHNS :.:: : mKIAA0 LASKSMESFLKVAGMRYLHGILGPIIDRVFEEKKYVELDPSKVEVKDVGCSGLHRPQTEA 370 380 390 400 410 420 933 residues in 1 query sequences 1768084 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:06:34 2006 done: Mon Mar 27 11:06:35 2006 Scan time: 0.960 Display time: 0.120 Function used was FASTA [version 3.4t11 Apr 17, 2002]