FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1544.ptfa, 1356 aa vs ./tmplib.26680 library 1767661 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.1126+/-0.00563; mu= 13.0815+/- 0.375 mean_var=173.3450+/-41.800, 0's: 0 Z-trim: 4 B-trim: 8 in 1/35 Lambda= 0.0974 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0540 ( 1539 res) mbg09815 (1539) 1364 205 6.8e-53 mKIAA0993 ( 646 res) mbg00079 ( 646) 426 73 1.9e-13 >>mKIAA0540 ( 1539 res) mbg09815 (1539 aa) initn: 1441 init1: 505 opt: 1364 Z-score: 1042.0 bits: 205.4 E(): 6.8e-53 Smith-Waterman score: 1651; 33.953% identity (37.112% ungapped) in 1022 aa overlap (320-1283:451-1443) 290 300 310 320 330 340 mKIAA1 ENMSITAKLERALEKVAPLLREIFVDFAPFLSRTLL----GSHGQELLIEGLVCMKSSTS : :::: : : . . .: ..: . mKIAA0 LSRALTTSSSETEHASTAVAASERCSWLVPLVRTLLDRAYGPLGLQWGLPSLPPTNGSPT 430 440 450 460 470 480 350 360 370 380 390 400 mKIAA1 VVELVMLLC-SQEWQNSIQKNAGLAFIELINEGRLLCHAMKDHIVRVANEAEFILNRQRA : . .: . ::.. :.:.. .. .. . : . . . . .. . .... mKIAA0 FFEDFQAFCATAEWRHFIDKQVQPTMSKFEMDTYAKSHDLMSGFWNACYDTLMSSGQRHQ 490 500 510 520 530 540 410 420 430 440 450 460 mKIAA1 ED-VHKHAEFESQCAQYAADRREEEKMCDHLISAAKHRDHVTANQLKQKILNILTNKHGA .: .... :. . : : . : . . . .: :: . :.. :: mKIAA0 RDRIQSRRAFKELVLEPAQRRARVEGLRYASVLKQQAAQHSTALLHWGALWRQLSSPCGA 550 560 570 580 590 600 470 480 490 500 510 mKIAA1 WGAVSHSQLHDFWRLDYWEDDLRRRRRFVRNAFGSTHAEAL-----LKSAVEYGTEEDVV :. : :.:. : : : ..: : . : :: : : ::: . mKIAA0 WALRIPPAPH--WKLSSAETYSRMRLKLVPNHHFDPHLEASALRDNLGEAPMTPTEETSL 610 620 630 640 650 520 530 540 550 560 570 mKIAA1 KSKKAFRSQAIVNQNSETELMLE--GDDDAV---SLLQEK-EIDNLAGPVVLSTPAQLIA : ..: .. : :: : :..: . ::..: :.:. .:::. ::.. mKIAA0 PL--AVTKEAKISAPPE-ELPEEQLGEEDLAALESLMEEAAELDEKREKLVLSAECQLVT 660 670 680 690 700 710 580 590 600 610 620 630 mKIAA1 PVVVAKGTLSITTTEIYFEVDEDDAAFKKIDTKVLAYTEGL-HG-KWMFSEIRAVFSRRY :.:. : : ::: ..:: :.. ....:. ::. : . ....: : ::. mKIAA0 VVAVVPGLLEITTQHVYFY----DGSTERVETE-----EGIGHDFRRPLAQLREVHLRRF 720 730 740 750 760 640 650 660 670 mKIAA1 LLQNTALEVFMANRTSVMFNFPDQATVKKV----------VYSLPRVG--VGTSYGL--- :. .:::.:. .... ..::: ....... .: .: . :.: mKIAA0 NLRRSALELFFIDQSNYFLNFPHKVAASSASSPCQAPRPQLYPIPSHTQLRNQVYSLLLR 770 780 790 800 810 820 680 690 700 710 720 730 mKIAA1 ---PQARRISLATPRQLYKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPW : .: .: .. ..:..::.: .:::::::::: ::::::::::::.::::::: mKIAA0 LRPPTQGYLSSRSPLEMLRASGLTQKWVQREISNFEYLMQLNTIAGRTYNDLSQYPVFPW 830 840 850 860 870 880 740 750 760 770 780 790 mKIAA1 VLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEEDQS--PPFHYNTHYS :: .: : :::. :. :::::::::..:::.: . :.::..:. . :::.:::: mKIAA0 VLQDYVSPVLDLSNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPAGTIDKFHYGTHYS 890 900 910 920 930 940 800 810 820 830 840 850 mKIAA1 TATSALSWLVRIEPFTTFFLNANDGKFDHPDRTFSSIARSWRTSQRDTSDVKELIPEFYY .:.... .:.:.::::.. .. ..:.:: :: : :.: .:.. .. .:::::::::.: mKIAA0 NAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARLESPADVKELIPEFFY 950 960 970 980 990 1000 860 870 880 890 900 mKIAA1 LPEMFVNSNGYHLG-VREDEVVVNDVDLPPWAKKPEDFVRINRMALESEFVSCQLHQWID .:... :.::. :: .. . :.:: ::::: .::::.. .:.:::::.:: .::.::: mKIAA0 FPDFLENQNGFDLGCLQLTNEKVGDVVLPPWAGSPEDFIQKHRQALESEYVSTHLHEWID 1010 1020 1030 1040 1050 1060 910 920 930 940 950 960 mKIAA1 LIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEP :::::::::: : .:::::.: ::::.:.:: ..: :.:.:. :.:::::: ::: :: mKIAA0 LIFGYKQRGPAAEEALNVFYYCTYEGAVDLDHVADERERKALEGIISNFGQTPCQLLKEP 1070 1080 1090 1100 1110 1120 970 980 990 1000 1010 1020 mKIAA1 HPPRSSAMH----LCFLP-QSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLTIPA :::: :: . : : .:: .:.. : .... :. : : .:: . mKIAA0 HPPRLSAEEAANRLARLDTNSPSIFQNLNQLKAFFAEVVSEAVPL--VLA-LVPHRQSHS 1130 1140 1150 1160 1170 1180 1030 1040 1050 1060 1070 1080 mKIAA1 VVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNKRQITDLVDQ .: . : .... . .: . :. . ... . :: ... . :.: :.. mKIAA0 FITQSSSDMLVTVSASGLLGTHTWLPYDRNINNYFTFSKDPTMGSPK-VQKLLSGPWVSD 1190 1200 1210 1220 1230 1240 1090 1100 1110 1120 1130 1140 mKIAA1 SIQINAHCFVVTADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIG : ..:. ..:. :.. .. : :: :.:: : :.: . . : :.::::: . : mKIAA0 S-GVSAQALAVAPDGKLLFSGGHWDGSLRVTSLPRGRLLNQLSRHLDIVTCLALDTCGI- 1250 1260 1270 1280 1290 1300 1150 1160 1170 1180 1190 1200 mKIAA1 GDCYIVSGSRDATLLLWYWSGRHHIIGDNPNSSDYPAPRAVLTGHDHEVVCVSVCAELGL :..:::::.: ..: . . ... : : :: :: : ::.. .:: . mKIAA0 ---YLISGSRDTTCMVWRLLQQSGL-----SAGLAPKPVQVLYGHVAAVSCVAISTELDM 1310 1320 1330 1340 1350 1210 1220 1230 1240 1250 mKIAA1 VISGAKEGPCLVHTIT-GDLLRALEGPENCLFPRLIS---VSSEGHCIIYY---ERG--- ..::...: ..::. :... ::. : : : :: ...::. .. :: mKIAA0 AVSGSEDGTVIIHTVRRGQFVAALRPPGATL-PGPISHLALGAEGQIVVQSSACERPGAQ 1360 1370 1380 1390 1400 1410 1260 1270 1280 1290 1300 1310 mKIAA1 ---RFSNFSINGKLLAQMEINDSTRAILLSSDGQNLVTGGDNGVVEVWQACDFKQLYIYP . .:.::.: :.. .... :. .. : mKIAA0 VTYSLHLYSVNGRLRASVTLTEQPTALTVAEDFVLLGTAQCSLHILHLNKLRPAVPPLPM 1420 1430 1440 1450 1460 1470 1320 1330 1340 1350 mKIAA1 GCDAGIRAMDLSHDQRTLITGMASGSIVAFNIDFNRWHYEHQNRY mKIAA0 KVPVHSVSVTKERSHVLVGLEDGKLIVVGAGQPSEVRSSQFARRLWRSSRRISQVSSGET 1480 1490 1500 1510 1520 1530 >>mKIAA0993 ( 646 res) mbg00079 (646 aa) initn: 492 init1: 376 opt: 426 Z-score: 333.6 bits: 73.0 E(): 1.9e-13 Smith-Waterman score: 467; 34.364% identity (37.594% ungapped) in 291 aa overlap (879-1161:1-274) 850 860 870 880 890 900 mKIAA1 YYLPEMFVNSNGYHLGVREDEVVVNDVDLPPWAK-KPEDFVRINRMALESEFVSCQLHQW :::: :..:.:..: ::: ..:: .::.: mKIAA0 PWAKGDPREFIRVHREALECDYVSAHLHEW 10 20 30 910 920 930 940 950 960 mKIAA1 IDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLI :::::::::.:: ::.:.::::.: :::.:.. .:.::. . : . :.:::: :.::. mKIAA0 IDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLFK 40 50 60 70 80 90 970 980 990 1000 1010 1020 mKIAA1 EPHPPRSSAMHL----CFLPQSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHL-TI .::::. .: . : .:.. . :. :: .:: .. . . : mKIAA0 KPHPPKRVRSRLNGDNIGISVPPGATSDKIFFHHLDNLR-PSLTPVKELKEPVGQIVCTD 100 110 120 130 140 1030 1040 1050 1060 1070 1080 mKIAA1 PAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHL-PIEMDPLIANNSGVNKR-QITD ....: .... :..: : ::. : . .: : : .. ... :: mKIAA0 KGILAVEQNKVLIPPAWNKTF----AWGYA-DLSCRLGTYESDKAVTVYECLSEWGQILC 150 160 170 180 190 200 1090 1100 1110 1120 1130 1140 mKIAA1 LVDQSIQINAHCFVVTADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSE : . .. :.:. . . .: :. . ... : : ..:: :.::: . : mKIAA0 AVCPNPKL-----VITGGTSTV-VC-VWEMGTSKEKAKPLTLKQALLGHTDTVTCATASL 210 220 230 240 250 1150 1160 1170 1180 1190 1200 mKIAA1 SYIGGDCYIVSGSRDATLLLWYWSGRHHIIGDNPNSSDYPAPRAVLTGHDHEVVCVSVCA .: ::::::: : ..: mKIAA0 AY----HIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGTYIH 260 270 280 290 300 310 1356 residues in 1 query sequences 1767661 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:47:45 2006 done: Mon Mar 27 10:47:47 2006 Scan time: 1.150 Display time: 0.180 Function used was FASTA [version 3.4t11 Apr 17, 2002]