FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1834.ptfa, 468 aa
 vs ./tmplib.26680 library

1768549 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.4963+/-0.00465; mu= 17.5299+/- 0.313
 mean_var=88.3538+/-19.718, 0's: 0 Z-trim: 2  B-trim: 25 in 1/35
 Lambda= 0.1364

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0281  ( 741 res)   mia14083                   ( 741) 2558  513  2e-146


>>mKIAA0281  ( 741 res)   mia14083                        (741 aa)
 initn: 2141 init1: 2141 opt: 2558  Z-score: 2721.1  bits: 513.5 E(): 2e-146
Smith-Waterman score: 2558;  80.430% identity (80.603% ungapped) in 465 aa overlap (1-465:275-738)

                                             10        20        30
mKIAA1                               DMANAFAQKHLRSIILNHVIRGNRPIKTEM
                                     .::: .:::.:: :::.::::..: :..::
mKIAA0 HLQGTDQEIQTYTIAVINALFLKAPDERRQEMANILAQKQLRYIILTHVIRAQRAINNEM
          250       260       270       280       290       300    

               40        50        60        70        80        90
mKIAA1 AHQLYVLQVLTFNLLEERMMTKMDPNDQAQRDIIFELRRIAFDAESDPSNVPGSGTEKRK
       ::::::::::::::::.::::::::.::::::::::::::::::::.:.:  ::  ::::
mKIAA0 AHQLYVLQVLTFNLLEDRMMTKMDPQDQAQRDIIFELRRIAFDAESEPNNSSGS-MEKRK
          310       320       330       340       350        360   

              100       110       120       130       140       150
mKIAA1 AMYTKDYKMLGFTNHINPALDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKH
       .:::.::: ::: ::.:::.:::::::::::::::::.:: :::.:::::::::::::::
mKIAA0 SMYTRDYKKLGFINHVNPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIVLENSSREDKH
           370       380       390       400       410       420   

              160       170       180       190       200       210
mKIAA1 ECPFGRSAIELTKMLCEILQVGELPNEGRNDYHPMFFTHDRAFEELFGICIQLLNKTWKE
       :::::::.:::::::::::.:::::.:  ::.:::::::::.:::.: ::::::::::::
mKIAA0 ECPFGRSSIELTKMLCEILKVGELPSETCNDFHPMFFTHDRSFEEFFCICIQLLNKTWKE
           430       440       450       460       470       480   

              220       230       240       250       260       270
mKIAA1 MRATAEDFNKVMQVVREQITRALPSKPNSLDQFKSKLRSLSYSEILRLRQSERMSQDDFQ
       ::::.::::::::::.::. ::: .::.:::::::::..:::.:::..::::::.:.:::
mKIAA0 MRATSEDFNKVMQVVKEQVMRALTTKPSSLDQFKSKLQNLSYTEILKIRQSERMNQEDFQ
           490       500       510       520       530       540   

              280       290       300       310       320       330
mKIAA1 SPPIVELREKIQPEILELIKQQRLNRLCEGSSFRKIGNRRRQERFWHCRLALNHKVLHYG
       : ::.::.::::::::::::::::::: ::. :::.. ::::..::.:::. ::::::::
mKIAA0 SRPILELKEKIQPEILELIKQQRLNRLVEGTCFRKLNARRRQDKFWYCRLSPNHKVLHYG
           550       560       570       580       590       600   

              340       350       360       370       380       390
mKIAA1 DLDDNPQGEVTFESLQEKVPVADIKAIVTGKDCPHMKEKSALKQNKEVLELAFSILYDPD
       ::...:::::  .:::.:.:::::::.::::::::::::.:::::::::::::::::: .
mKIAA0 DLEESPQGEVPHDSLQDKLPVADIKAVVTGKDCPHMKEKGALKQNKEVLELAFSILYDSN
           610       620       630       640       650       660   

              400       410       420       430       440       450
mKIAA1 ETLNFIAPNKYEYCIWIDGLSALLGKDMSSELTKSDLDTLLSMEMKLRLLDLENIQIPEA
         ::::::.:.::::: :::.::::::: :.::..:::::::::.:::::::::::::.:
mKIAA0 CQLNFIAPDKHEYCIWTDGLNALLGKDMMSDLTRNDLDTLLSMEIKLRLLDLENIQIPDA
           670       680       690       700       710       720   

              460        
mKIAA1 PPPVPKEPSSYDFVYHYG
       :::.:::::.:::::   
mKIAA0 PPPIPKEPSNYDFVYDCN
           730       740 




468 residues in 1 query   sequences
1768549 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:54:03 2006 done: Mon Mar 27 10:54:04 2006
 Scan time:  0.680 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]