FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1927.ptfa, 1248 aa
 vs ./tmplib.26680 library

1767769 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.0337+/-0.0058; mu= 9.4465+/- 0.387
 mean_var=163.4434+/-37.103, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1003

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1453  ( 974 res)   mph01418                   ( 974)  191   40  0.0019


>>mKIAA1453  ( 974 res)   mph01418                        (974 aa)
 initn:  79 init1:  52 opt: 191  Z-score: 154.2  bits: 40.3 E(): 0.0019
Smith-Waterman score: 191;  20.952% identity (22.798% ungapped) in 420 aa overlap (256-660:522-922)

         230       240       250       260       270       280     
mKIAA1 PNYALTSRFRQIEVLTTVANAFSSLYSQVSGTPLQRIGSMSSVTSTKEVADSPPPLTRSN
                                     : :..: ::. ..   .  : .  :   ..
mKIAA1 SPGNGVVPSPLMAKRQDSVMMRKLPAPEEVGIPVSRNGSLPGLKLQNGCAPAKTPA--GS
             500       510       520       530       540           

         290       300       310       320       330       340     
mKIAA1 TANRLMKTLSKLNLCVDKTEKGEGGSSPAAEKGRTLSISLSEDGGGGKSDPKLQKVVKKK
        . ::  : ...   .:  : :.  .. :  .. : : . :. :. : .. . :.  .  
mKIAA1 PSPRLTPTPTHMPTILD--EPGKKVKKSAPPQSLTTSPTTSQ-GSPGTGESRSQRPGSWA
     550       560         570       580        590       600      

         350           360       370       380       390       400 
mKIAA1 ESSSMLAT----VTEEVSGSSSTVTDSVDADRLSEEADSTISHQEESEESREAHSQEKDP
         .....:    ... ....     ..  .:   :..::. :  :.:  :  :.. .   
mKIAA1 SRDTIFSTSPKLLARAITNGHRLKGEGSGVDL--EKGDSSSSSPEHSASSDPAKAPQTAE
        610       620       630         640       650       660    

                   410       420       430       440       450     
mKIAA1 LRKSAVTD------PDLGHDGRVSSHCELESSSELKSAQASSSEKEPCAPLTIPSIRNIM
        : . . :      :  ::   . .  . .   .:::   ::.  :: . .. :  ... 
mKIAA1 SRAAHACDSQGTNCPTAGHPKALLNGVDAKMV-KLKSPALSSTTTEPTSLMSPPPAKKLA
          670       680       690        700       710       720   

         460       470       480       490       500       510     
mKIAA1 TQQKDSFEMEEVQSTEGEAPHVPATCQLSLAKSKRDHLLRTASQHSDSSGFAEDSTDCVS
        . : .  .... ...  .:   : :.:. .  :  : . ...   ...  :  .    .
mKIAA1 LSAKKASTLRRATGNDIGSPSPSAFCDLT-SPMKATHPVVASTGPVSKTRTAAPAPRPST
           730       740       750        760       770       780  

           520       530         540       550       560       570 
mKIAA1 LNHL--LVNESLQAMGSSA-DSC-DSETTVTSLGEDHVTPTAQDQPYFNESEEESLAPLQ
         :   : . : . .:.:  .::  :  :     . : :   .. :   :. :   .: .
mKIAA1 HPHSASLSSSSAKPLGTSEPQSCRPSAWTPLPQVNGHFTSHLHQLP---EASEALHSPSK
            790       800       810       820          830         

             580       590       600       610       620       630 
mKIAA1 KGRAKVEIVAEKRKADNQDFPQCVTAENAGNNESTKGPCEPGHQITETGEHPPLAATGEL
       : : :.     .: . .  .:::. .  :.  .. :  :  :.     :   :    :..
mKIAA1 K-RKKTPNGDPQRLGIDTLLPQCLRGAPAAARRKRKKRCSEGE-----GATAP-KQEGQF
     840        850       860       870       880             890  

              640       650       660       670       680       690
mKIAA1 PREE-SVESDVEKGSECEFAQYTTHHILRSLASFEAQGSGMSSEKKTGFPSSVDRVNTAL
         .  :  :. :.:.. .   . . ::: :                              
mKIAA1 QDQSWSSGSQKEEGTQPQVNGHQVSHILDSYHVSSRKRRKRKRSEGLSQEATPSQDLIQH
            900       910       920       930       940       950  




1248 residues in 1 query   sequences
1767769 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:56:01 2006 done: Mon Mar 27 10:56:02 2006
 Scan time:  1.200 Display time:  0.050

Function used was FASTA [version 3.4t11 Apr 17, 2002]