FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0940.ptfa, 722 aa vs ./tmplib.26680 library 1768295 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 12.8336+/-0.00946; mu= -20.0251+/- 0.624 mean_var=578.5847+/-141.466, 0's: 0 Z-trim: 6 B-trim: 0 in 0/36 Lambda= 0.0533 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1673 ( 704 res) mbg05294 ( 704) 1979 167 5.5e-42 >>mKIAA1673 ( 704 res) mbg05294 (704 aa) initn: 2308 init1: 1847 opt: 1979 Z-score: 846.1 bits: 167.1 E(): 5.5e-42 Smith-Waterman score: 2552; 57.355% identity (68.770% ungapped) in 741 aa overlap (3-722:66-704) 10 20 30 mKIAA0 QQAAQTMQDDLLMDKSKTQPQSQQQQRQQQQQ :....::..: .. . .::::..:. . mKIAA1 NATPNPAAFINNNTAANGSSAGSAWLFPAPATHNIQDEIL---GSEKAKSQQQEQQDPLE 40 50 60 70 80 90 40 50 60 70 80 90 mKIAA0 QQQLQPEPGAAEAPSTPLSSEIPKPEDSSAVPALSPASAPPAPNGPDKMQMESPLLPGLS .:::.: :: :: : .: : :.. :. :. :: .:...:::.: :.. mKIAA1 KQQLSPSPGQ-EAGILP-ETEKAKAEEN---PG---DSSSENSNGKEKLRIESPVLTGFD 100 110 120 130 140 100 110 120 130 140 mKIAA0 FHQPPQQPPPPQEPTAPGASLSPSFGSTWS-----TGTTNAVED-SFF-QGITP----VN ... : :. ..::. .: :.:: ...: :: ::: :: .: : mKIAA1 YQEATGLGTSTQPLTSSASSLT-GF-SNWSAAIAPSSSTIINEDASFFHQGGVPGASANN 150 160 170 180 190 200 150 160 170 180 190 200 mKIAA0 GTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPQPPQPAQPPQAQPSQQRRSP :..:::::::::.: :::.:::::: .::: :. :. : ..: .:::::: mKIAA1 GALLFQNFPHHVSPGFGGSFSPQIG-PLSQHH-------PHHPH-FQHHHSQHQQQRRSP 210 220 230 240 250 210 220 230 240 250 mKIAA0 ASPSQAPYAQRSAAAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQS----VNA ::: :...:::: ... : . : .. : :...:: .. mKIAA1 ASPHPPPFTHRSAA-FNQLPHL---------------ANNLNKPPSPWSSYQSPSPTPSS 260 270 280 290 260 270 280 290 300 310 mKIAA0 AWSAPSNPWGGLQA--GRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFPR .:: .. .:: : ::: ::... :. .::: :::::: :.:: : :. : mKIAA1 SWSPGGGGYGGWGASQGRDHRRGLNGGI-------TPLNSISPLKKNFASNHIQLQKYAR 300 310 320 330 340 350 320 330 340 350 360 370 mKIAA0 -AAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTDHEPLKGK .. .. ::::::. :.:: ..:: .: : ::..::::.::.:..:.... .::. mKIAA1 PSSAFAPKSWMEDSLNRADN---IFPFPERPR---TFDMHSLESSLIDIMRAENDSIKGQ 360 370 380 390 400 380 390 400 410 420 430 mKIAA0 HYPPSGPPMSFADIMWRNHFAGRMGINFHHPGTDNIMALNTRSYGRRRGRSSLFPFEDAF :::::.::.: mKIAA1 --------------------------------------------------SSLFPMEDGF 410 440 450 460 470 480 490 mKIAA0 LDDSHGDQALSSGLSSPTRC---QNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPL :::..::: : :::.:: .: ::::::::::::::::::::::::::::::::::::: mKIAA1 LDDGRGDQPLHSGLGSP-HCFTHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPL 420 430 440 450 460 470 500 510 520 530 540 550 mKIAA0 VVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSPTIKDKPVQI .::::::::::::::::::::::::.:::::::::::.:::::::::::::::::::::: mKIAA1 IVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQI 480 490 500 510 520 530 560 570 580 590 600 610 mKIAA0 RPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: mKIAA1 RPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPEL 540 550 560 570 580 590 620 630 640 650 660 670 mKIAA0 KYPKGAGRVAFSNQQSYIAAISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGK ::::::::::::::::::::::::::::::..:::::::::::::::.::::::.::::: mKIAA1 KYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGGK 600 610 620 630 640 650 680 690 700 710 720 mKIAA0 FAPFFCANVTCLQYYCEYCWASIHSRAGREFHKPLVKEGGDRPRHVPFRWS :::::::::::::::::::::.:::::::::::::::::::::::. :::. mKIAA1 FAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN 660 670 680 690 700 722 residues in 1 query sequences 1768295 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:32:24 2006 done: Mon Mar 27 10:32:25 2006 Scan time: 0.860 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]