FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1127.ptfa, 253 aa vs ./tmplib.26680 library 1768764 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.6331+/-0.00393; mu= 10.5530+/- 0.262 mean_var=75.1224+/-17.810, 0's: 0 Z-trim: 2 B-trim: 4 in 1/35 Lambda= 0.1480 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1455 ( 1828 res) mbg00055 (1828) 1022 228 2.1e-60 mKIAA1302 ( 1198 res) mbg04788 (1198) 920 206 5.6e-54 >>mKIAA1455 ( 1828 res) mbg00055 (1828 aa) initn: 553 init1: 509 opt: 1022 Z-score: 1176.8 bits: 228.1 E(): 2.1e-60 Smith-Waterman score: 1022; 62.109% identity (64.634% ungapped) in 256 aa overlap (2-253:1579-1828) 10 20 mKIAA1 LITGVQQTTERHNQAFLAL----EGQVITKK : :::: . :. .:::.: : :: .: mKIAA1 AIPGFPVPKFDLTEPSYELVKSQQWEDVPPIFGVQQQVARQAKAFLSLGKMAEVQVSRRK 1550 1560 1570 1580 1590 1600 30 40 50 60 70 80 mKIAA1 LHASIREKAGHWFATTTPIIGKGIMFAIKEGRVTTGVSSIASEDSRKVASVLNNAYYLDK : :.. ::::. .::::.:.:...::: :.: .::.:: :::.:::::.::.. mKIAA1 AGA---EQSWLWFATVKSLIGKGVMLAVSQGRVQTNVLNIANEDCIKVAAVLNNAFYLEN 1610 1620 1630 1640 1650 1660 90 100 110 120 130 140 mKIAA1 MHYSIEGKDTHYFVKIGAADGDLVTLGTTIGRKVLESGVNVTVSQPTLLVNGRTRRFTNI .:..:::::::::.: . ..:: :: : :::.::.:.:::::: : .::::::::... mKIAA1 LHFTIEGKDTHYFIKTTTPESDLGTLRLTSGRKALENGINVTVSQSTTVVNGRTRRFADV 1670 1680 1690 1700 1710 1720 150 160 170 180 190 200 mKIAA1 EFQYSTLLLSIRYGLTPDTLDEEKARVLDQARQRALGTAWAKEQQKARDGREGSRLWTEG :.:...: : .:::.: :::::::.:.:::::::. :::.:::..:::.::.:::::: mKIAA1 EMQFGALALHVRYGMT---LDEEKARILEQARQRALARAWAREQQRVRDGEEGARLWTEG 1730 1740 1750 1760 1770 1780 210 220 230 240 250 mKIAA1 EKQQLLSTGRVQGYEGYYVLPVEQYPELADSSSNIQFLRQNEMGKR ::.::::.:.::::.::::: ::::::::::..:::::::.:.::: mKIAA1 EKRQLLSAGKVQGYDGYYVLSVEQYPELADSANNIQFLRQSEIGKR 1790 1800 1810 1820 >>mKIAA1302 ( 1198 res) mbg04788 (1198 aa) initn: 979 init1: 493 opt: 920 Z-score: 1061.4 bits: 206.2 E(): 5.6e-54 Smith-Waterman score: 920; 54.264% identity (57.143% ungapped) in 258 aa overlap (2-253:948-1198) 10 20 mKIAA1 LITGVQQTTERHNQAFLALE------GQVIT : ::: .... .::..:: :..:: mKIAA1 YPKPDTDAMEPSYELVHTQMKTQEWDNSKSILGVQCEVQKQLKAFVTLERFDQLYGSTIT 920 930 940 950 960 970 30 40 50 60 70 80 mKIAA1 KKLHASIREKAGHWFATTTPIIGKGIMFAIKEGRVTTGVSSIASEDSRKVASVLNNAYYL . .: .: ::.. :.:::. ::.:.::::: . :.:.::.:..:..::::.:: mKIAA1 SCQQAPETKK----FASSGSIFGKGVKFALKDGRVTTDIISVANEDGRRIAAILNNAHYL 980 990 1000 1010 1020 1030 90 100 110 120 130 140 mKIAA1 DKMHYSIEGKDTHYFVKIGAADGDLVTLGTTIGRKVLESGVNVTVSQPTLLVNGRTRRFT ...:..:.: ::::::: : ..:::. :: . ::..::.:::::::: . ...:::::.: mKIAA1 ENLHFTIDGVDTHYFVKPGPSEGDLAILGLSGGRRTLENGVNVTVSQINTMLSGRTRRYT 1040 1050 1060 1070 1080 1090 150 160 170 180 190 200 mKIAA1 NIEFQYSTLLLSIRYGLTPDTLDEEKARVLDQARQRALGTAWAKEQQKARDGREGSRLWT .:..:: .: :. ::: : .::::.:::. :::::. :::.:::. :.:.:: : :: mKIAA1 DIQLQYRALCLNTRYGTT---VDEEKVRVLELARQRAVRQAWAREQQRLREGEEGLRAWT 1100 1110 1120 1130 1140 1150 210 220 230 240 250 mKIAA1 EGEKQQLLSTGRVQGYEGYYVLPVEQYPELADSSSNIQFLRQNEMGKR .:::::.:.:::::::.:..: :::::::.::..::.:.::.:::.: mKIAA1 DGEKQQVLNTGRVQGYDGFFVTSVEQYPELSDSANNIHFMRQSEMGRR 1160 1170 1180 1190 253 residues in 1 query sequences 1768764 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:36:47 2006 done: Mon Mar 27 10:36:47 2006 Scan time: 0.460 Display time: 0.030 Function used was FASTA [version 3.4t11 Apr 17, 2002]