FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0428.ptfa, 384 aa
 vs ./tmplib.26680 library

1768633 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.9384+/-0.0053; mu= 3.1330+/- 0.353
 mean_var=157.4301+/-36.088, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1022

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4072  ( 390 res)   mbg15453                   ( 390) 1463  227 1.3e-60


>>mKIAA4072  ( 390 res)   mbg15453                        (390 aa)
 initn: 928 init1: 736 opt: 1463  Z-score: 1180.5  bits: 227.2 E(): 1.3e-60
Smith-Waterman score: 1619;  70.381% identity (76.677% ungapped) in 341 aa overlap (4-321:12-347)

                       10        20        30        40        50  
mKIAA0         NINMAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGR
                  ::..:.:.::::::::::::..::::::: : ::::::: :::::::::
mKIAA4 PKGTEPKVVLIMALNVAPVRDTKWLTLEVCRQYQRGTCSRSDEECKFAHPPKSCQVENGR
               10        20        30        40        50        60

             60        70        80        90        100       110 
mKIAA0 VIACFDSLKGRCSRENCKYLHPPPHLKTQLEINGRNNLIQQKNMA-MLAQQMQLANAMMP
       ::::::::::::::::::::::: ::::::::::::::::::. : :::::::.   :.:
mKIAA4 VIACFDSLKGRCSRENCKYLHPPTHLKTQLEINGRNNLIQQKTAAAMLAQQMQF---MFP
               70        80        90       100       110          

             120       130       140         150       160         
mKIAA0 GAPLQPVPMFSVAPSLATSASAAFNPYLGPVSP--SLVPAEILPTAPMLVTGNPGVPVPA
       :.::.::: : :.:...:.:. .: :::.::.:  .:::.:.:::.:..: :.: : ::.
mKIAA4 GTPLHPVPTFPVGPTIGTNAAISFAPYLAPVTPGVGLVPTEVLPTTPVIVPGSPPVTVPG
       120       130       140       150       160       170       

     170       180       190       200       210       220         
mKIAA0 AAAAAAQKLMRTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKG
       ..:.  :::.:::.::::::.::::: :::.:::::::::::::::::::::::::::::
mKIAA4 STAT--QKLLRTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTNDNTVTVCMDYIKG
       180         190       200       210       220       230     

     230       240       250       260        270                  
mKIAA0 RCSREKCKYFHPPAHLQAKIKAAQYQVNQAA-AAQAAATAAA------------------
       :: :::::::::::::::::::::.:.:::: ::::::.::.                  
mKIAA4 RCMREKCKYFHPPAHLQAKIKAAQHQANQAAVAAQAAAAAATVMTQSTAKALKRPLEATV
         240       250       260       270       280       290     

               280       290       300       310       320         
mKIAA0 -MGIPQAVLPPLPKRPALEKTNGATAVFNTGIFQYQQALANMQLQQHTAFLPPGSILCMT
        ...: ..: ::::: ::::.:::..::: ....:::::.. ::::::::.:        
mKIAA4 DLAFPPGALHPLPKRQALEKSNGASTVFNPSVLHYQQALTSAQLQQHTAFIPTDNSEIIN
         300       310       320       330       340       350     

     330       340       350       360       370       380    
mKIAA0 PATSVVPMVHGATPATVSAATTSATSVPFAATATANQIPIISAEHLTSHKYVTQM
                                                              
mKIAA4 RNGMECQESALRITKHCYCTYYPVSSSIELPQTAC                    
         360       370       380       390                    




384 residues in 1 query   sequences
1768633 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:20:30 2006 done: Mon Mar 27 10:20:30 2006
 Scan time:  0.600 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]