FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4152.ptfa, 478 aa
 vs ./tmplib.26680 library

1768539 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.7919+/-0.00401; mu= 19.3840+/- 0.269
 mean_var=69.7827+/-15.203, 0's: 0 Z-trim: 4  B-trim: 0 in 0/36
 Lambda= 0.1535

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0879  ( 450 res)   mic18036                   ( 450)  458  111 2.4e-25


>>mKIAA0879  ( 450 res)   mic18036                        (450 aa)
 initn: 1069 init1: 316 opt: 458  Z-score: 547.3  bits: 110.6 E(): 2.4e-25
Smith-Waterman score: 1116;  45.063% identity (50.425% ungapped) in 395 aa overlap (30-418:57-415)

                10        20        30        40        50         
mKIAA4  KMIPEFLLASCTLATLCHSAPFSLQPEEQKVLVVSFDGFRWDYLYKVPTPHFHYIMKNG
                                     ..:.::::::: ::: .   ::.. ..:.:
mKIAA0 NMFNMKILVIPLFWGLVTGYKGNSSDSSAPRLLLVSFDGFRADYLKSYDLPHLQNFIKEG
         30        40        50        60        70        80      

      60        70        80        90       100       110         
mKIAA4 VHVNQVTNVFITKTYPNHYTLVTGLFAENHGIVANDMFDPILNKSFSLEHMDIYDSKFWE
       : :..: :::::::.::::..::::. :.::::::.:.: . .: :: :  :  :  .:.
mKIAA0 VLVEHVKNVFITKTFPNHYSIVTGLYEESHGIVANSMYDSVTKKHFS-ESND-KDPFWWN
         90       100       110       120       130         140    

     120        130       140       150       160       170        
mKIAA4 EATPIWITNQ-RAGHASGAAMWPGADVKIHDSFPTYYLPYNESVSFEDRVAKIIEWFTAK
        : :::.::: . ...:.::::::.:: ::.   .:..                      
mKIAA0 GAEPIWVTNQLQENRSSAAAMWPGTDVPIHNITASYFM----------------------
          150       160       170       180                        

      180       190       200        210       220       230       
mKIAA4 DPINLGFLYWEEPDDTGHDVGP-DSPLMGSVISDVDHKLGYLIKMLKRAKLWNNVNLIVT
                 .::: .::  :: :.  :  :...::  .: ..  ::   ::...:.:.:
mKIAA0 ----------NEPDVSGHKYGPEDKENMRRVLKEVDDLIGDIVLKLKVLGLWDSLNVIIT
                      190       200       210       220       230  

       240       250       260       270       280       290       
mKIAA4 SDHGMTQCSKQRVIELDRYLDKEHYTLIDHSPVAAILPKEGKFDEVYDALAGAHPNLTVY
       :::::.::::.:.:.::  .:. .:..:: .:::::::: .   :::: :   .:...::
mKIAA0 SDHGMAQCSKNRLIDLDSCIDRSNYSVIDLTPVAAILPKIN-VTEVYDKLKRCNPHMNVY
            240       250       260       270        280       290 

       300       310       320       330       340       350       
mKIAA4 KKEEIPERWHYKHNDRVQPIVAVADEGWYILQNKSDDFLLGNHGYDNALAEMHPIFLAHG
        :: ::.:..:.:..:.:::. ::.::: :  :::. : ::.:::::.:  :::.. :::
mKIAA0 LKEAIPNRFYYQHSSRIQPIILVAEEGWTITLNKSS-FKLGDHGYDNSLPSMHPFLAAHG
             300       310       320        330       340       350

       360       370       380       390       400           410   
mKIAA4 PAFRKNFTKEAMNSTDLYSLLCHLLNLTALPHNGSFWNVQDLLSSA----TPKPIPYTQS
       :::::.. . ..:..:.: ..::.:.:   :.::.. ... :: .      :. :  . :
mKIAA0 PAFRKGYRQSTINTVDIYPMMCHILGLKPHPNNGTLSHTKCLLVDQWCINLPEAIGIVVS
              360       370       380       390       400       410

           420       430       440       450       460       470   
mKIAA4 TTLLLGSDKPGEDEQEESYPYYIGVSLGSIIAMVFFVVLIKHLIRSQVNTLQYRQVEVAQ
       . :.:                                                       
mKIAA0 ALLVLTMLTGLMIFMRSRASTSRPFSRLQLQEDDDDPLID                    
              420       430       440       450                    




478 residues in 1 query   sequences
1768539 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:03:31 2006 done: Mon Mar 27 11:03:32 2006
 Scan time:  0.710 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]