FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0297.ptfa, 1431 aa vs ./tmplib.26680 library 1767586 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.0652+/-0.0053; mu= 13.4017+/- 0.354 mean_var=144.7329+/-33.782, 0's: 0 Z-trim: 5 B-trim: 128 in 1/35 Lambda= 0.1066 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1017 ( 1096 res) mpm03366 (1096) 352 67 2.4e-11 mKIAA1358 ( 1038 res) mbg03452 (1038) 211 45 7.7e-05 >>mKIAA1017 ( 1096 res) mpm03366 (1096 aa) initn: 214 init1: 76 opt: 352 Z-score: 296.2 bits: 67.0 E(): 2.4e-11 Smith-Waterman score: 384; 27.113% identity (31.365% ungapped) in 568 aa overlap (20-540:17-554) 10 20 30 40 50 60 mKIAA0 RTSVETLTMASVSDPVTFREFCPLYYLLNAIPTKIQRGFRSIVVYLTALDTNGDYIAVGS :: : ::.:. .: . :.. .. ..:.:: mKIAA1 MTFVPVIPEAYSHVLAEFESLDPLLTALRLDSSR------LRCTSIAVSRKWLALGS 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 SIGMLYLYCRHLNQMKKYNVDGKMESITVVKLLSCFDDLVAAGTASGRVAVFQLVSSLPG . : : : . ... . .. . .:. . : :: ::..:..: :.:..: . : mKIAA1 TGGGLNLIQKDGWKQRLF-LSHREGAISQIACCSHDDDYVAVATSQGLVVVWELNQERRG 60 70 80 90 100 110 130 140 150 160 170 mKIAA0 RNKQLRRFDVTGVHK-TSITALAWSPNGMKLFSGDDKGKIVYSSLD-LDQG-------LC . . :. :.. :: ..::: :. ...: :: ::. .:. : :. . mKIAA1 KPE---RIHVSSEHKGRKVTALCWDTAVLRVFVGDHVGKVSAIKLNTLKQAKAAAAFVMF 120 130 140 150 160 180 190 200 210 220 230 mKIAA0 SSHLVLEEPSSIVQLDYSQKVLLVSTLQRSLLFYTEEKAVKQIGSQPRKSTGKFGACFIP . :: : .::::: . ::::.: : :: : ::.. :. :..::::.: mKIAA1 PVQTVLTVDSCVVQLDYLDGRLLVSSLTR-------EKFWK-IGNKERH--GEYGACFFP 170 180 190 200 210 240 250 260 270 280 290 mKIAA0 GLCKQSDL-TLYAARPGLRLWKADVHGTVQATYILKDVFAGGVTPFELYPRLEPSDGGSC : : .. ..: :::: :.:... : : .:. .: ... : . : ::. . mKIAA1 GRCAGGQQPVIYCARPGSRMWEVNFDGEVLSTHQFKKLLSMPPLPV-ITARSEPQYDHT- 220 230 240 250 260 270 300 310 320 330 340 mKIAA0 ISPEKHLGLVSCF-FREGWVLSWNEYSIYLLDTVNQATVAGLEGLGDIVSVSCTENEIFF .. . :.. . . . : ::.:.: .::.. : .. : . :: .:. .::.: mKIAA1 VGSSQSLAFPKLLHLSEHCVLTWTEKGIYIFIPQNVQVLLWSE-VKDIQDVAVYKNELFC 280 290 300 310 320 330 350 360 370 380 mKIAA0 LKGDRNIIRIS--SRPEGIASIVRDGL----EMTRCSEQV--------------HGQHLE :. . .: ..: : . . ..: :: : : : . .::. mKIAA1 LHFNGKISHLSLLSVERCVERLLRRGLWDLAARTCCLFQNSIITSRARKTLTADKLEHLK 340 350 360 370 380 390 390 400 410 420 430 440 mKIAA0 KSLGATVCE---TRLRGSSVA-SSVASEQRSRSSSLNSTDSGSGLLLPGLQ--AASELG- ..: :.: ..: . . : :: ::..: .: : .: :. .:. : mKIAA1 SQLDLTACSELISQLDDLILRFEPLESACSSRRSSISSHESFS-ILDSGIYRIISSRRGS 400 410 420 430 440 450 450 460 470 480 490 mKIAA0 QSGQPSSQRFSVISSEDFDQELIVKPIKVKKRRR----KRKTEGGSKSTCPSSLEST--- :: . : . : ::: . ... . .. .. .:. :..:.: : .... mKIAA1 QSDEDSCSLHSQTFSEDERLKEFASHQEEEQPEQGCGANRNEESASHSPVMSEVDKSEAF 460 470 480 490 500 510 500 510 520 530 540 550 mKIAA0 -PCS-ELPADSPQSLNTDLLSMTSSALGSSMDQLSTESPEQESNLGGEVNGISQENSGPE : : :: :: . :.:. .:. .:.... .. :. ..: : mKIAA1 LPFSIALPFRSP----SPLVSL--QAVKDSVSSFVRKTTEKIGTLHGSPELKEHMKRKEK 520 530 540 550 560 560 570 580 590 600 610 mKIAA0 AFHVLELPGPAPGPASTPTDEENCTGKEASQCSHTQDTDLLSGVLTLPLQPEEDVGGADI mKIAA1 EIHQPPKEDRLQELTAATAEAMTKLLDPLVLFEPKVLRMVLLEWLSQLEKTFAMKDFPGI 570 580 590 600 610 620 >>mKIAA1358 ( 1038 res) mbg03452 (1038 aa) initn: 230 init1: 109 opt: 211 Z-score: 179.2 bits: 45.2 E(): 7.7e-05 Smith-Waterman score: 242; 26.293% identity (29.048% ungapped) in 232 aa overlap (1201-1423:82-300) 1180 1190 1200 1210 1220 mKIAA0 IISAQNVQCRPSTVQLPPDAEMRTYAACQDALWALDSLGQVFIRT-LSKSCPTGMHWTKL ..::.. :.:. : .:. : : :. . mKIAA1 SKDDPKELPDPFNDLSVGGWEITEEPVGRLSVWAVSLQGKVWYREDVSHPNPEGSSWSLV 60 70 80 90 100 110 1230 1240 1250 1260 1270 1280 mKIAA0 DLSQLGTVRLTSLACG-NQHIWACDSRGGVYFRVGTQPLNPSLMLPAWIMIEPPVQLAGV . : : ....:: .. ::: .: . : :. ::. : :.::: . :. mKIAA1 ETP--GEV--VQISCGPHDLIWATLWEGQALVREGVCRNNPKGSY--WSMVEPPGSENGI 120 130 140 150 160 1290 1300 1310 1320 1330 1340 mKIAA0 TLVSVHSSPNDQMLWALDSRWNVHVRTGITEEMPVGTDW-EHVPGLQACQLALSTRTVWA .: : . ...::. . .: : :.. . : ::.: : : . ...:. . ::. mKIAA1 ----MHVSAGVSVVWAITKDRKVWFRRGVNSHNPCGTSWIEMVGEMTMVNVGLNDQ-VWG 170 180 190 200 210 220 1350 1360 1370 1380 1390 1400 mKIAA0 -RCPNGDLARRYGITDKNPAGDYWKKIP-GSVSCFTVTSSDELWAVGSSGCLLQRLTKTF : . . : :.: .. .: :: : : : . ..:. .. :.::.. .. mKIAA1 ISCEDRAVYFRQGVTPSELSGKTWKAIVVGRESDRSHSGSSS--SLLSAGCFFGDEVRGS 230 240 250 260 270 1410 1420 1430 mKIAA0 SHSHNPQNS----QVASSHPEELEEEWEVI . :... .: . ::. mKIAA1 GTESAPSDTDASLEVERQGPEQPLPKEALDNSTNLKGSLSKGHETSGNTDHSTENACLTE 280 290 300 310 320 330 1431 residues in 1 query sequences 1767586 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:16:53 2006 done: Mon Mar 27 10:16:54 2006 Scan time: 1.260 Display time: 0.120 Function used was FASTA [version 3.4t11 Apr 17, 2002]