FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1093.ptfa, 571 aa vs ./tmplib.26680 library 1768446 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 9.3698+/-0.0073; mu= -4.3528+/- 0.482 mean_var=334.2049+/-83.671, 0's: 0 Z-trim: 7 B-trim: 0 in 0/36 Lambda= 0.0702 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1582 ( 1362 res) mbg06675 (1362) 734 88 4.5e-18 mKIAA0192 ( 1146 res) msp04171 (1146) 233 37 0.0073 >>mKIAA1582 ( 1362 res) mbg06675 (1362 aa) initn: 1106 init1: 535 opt: 734 Z-score: 416.9 bits: 88.3 E(): 4.5e-18 Smith-Waterman score: 1341; 43.627% identity (53.831% ungapped) in 612 aa overlap (3-568:820-1361) 10 20 30 mKIAA1 AMLSQLPQIPQFQLACQLLLQQQQQQQQLLQN ...: :. :.::: : : : :::.:: mKIAA1 PQVQAQLLQFAAKNIGLSPALLTSPINPQHMTMLNQLYQLQLAYQRL----QIQQQMLQA 790 800 810 820 830 840 40 50 60 70 80 mKIAA1 QRKISQAVRQQQEQQLARMVSALQQQQQQQQQQQRQPSMKHSPSHPVGPKPHL------- ::..: .::: :::.:: .. :::: ::.:.: : . ..: : : ::: mKIAA1 QRNVSGPMRQQ-EQQVARTITNLQQQIQQHQRQLAQALLVKQPPPP-PPPPHLSLHPSAG 850 860 870 880 890 900 90 100 110 120 mKIAA1 ----DNMVPNALNVGLPDLPTK---------GPIPGYG----SGFSSGGMDYGMVGGKEA ... : ::::: :: .: : : . .: :. :. . mKIAA1 KSGMESFPPPPQAPGLPDLQTKEQQSSPNTFAPYPLAGLNPNMNVNSIDMSSGLSVKDPS 910 920 930 940 950 960 130 140 150 160 170 mKIAA1 GTESRFKQWT--SMMEGLPSVATQ-EATMHKNGAIVA------PGKTRGGSPYNQFDIIP ..::. ::: . : .: :.:. . . :.::: . :::. . :...:.: mKIAA1 QSQSRLPQWTHPNSMGNLSSAASPLDQNPSKHGAIPGGLSIGPPGKSSIDDSYGRYDLIQ 970 980 990 1000 1010 1020 180 190 200 210 220 230 mKIAA1 GDTLGGHTGPAG--DSWLPAKSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNIDPESDPY .. . . :.. :: ::: ..:: :..:. ::::::.:::::::.::::::.:: mKIAA1 -NSESPASPPVAVPHSWSRAKSD-SDKI-SNGSSISWPPEFHPGVPWKGLQNIDPENDPD 1030 1040 1050 1060 1070 1080 240 250 260 270 280 290 mKIAA1 VTPGSV-LGGTTTSPIVDTDHQLLRDNTTGSNSSLNTSLPSPGAWPYSASDNSFTNVHST :::::: : : .. : :... ::. . mKIAA1 VTPGSVPTGPTINTTIQDVNRYLLK----------------------------------S 1090 1100 300 310 320 330 340 350 mKIAA1 SAKFPDYKSTWSPDPIGHNPTHLSNKMWKNHISSRNTTPLPRPPPGLTNPKPASPWSSTA ..:. : ::::: : .:. . ::...:: :::: ::::::.::::.: :. :. mKIAA1 GGKLSDIKSTWSSGPASHTQASLSHELWK---VPRNTTAPTRPPPGLANPKPSSTWG-TS 1110 1120 1130 1140 1150 1160 360 370 380 390 400 410 mKIAA1 PRSVRGWGTQDSRIASASTWSDGGSVRPSYWLVLHNLTPQIDGSTLRTICMQHGPLLTFH : :: : .:.:.:: : : : ::::.:::::::::::::.:.:::::.::: mKIAA1 PL---GW---TSSYSSGSAWSTDTSGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLITFH 1170 1180 1190 1200 1210 420 430 440 450 460 470 mKIAA1 LNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFATEDEVSRFLAQAQPPTPAAT ::::::.:..:::.:.:::::: .:::::::::::::::: :.::.:::::.: : mKIAA1 LNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQ-----AL 1220 1230 1240 1250 1260 1270 480 490 500 510 520 530 mKIAA1 PSAPATGWQSLETSQNQADPVGPALNLFGGSTGL-----GQWSSSA-GGSSGADLAGTSL : :...::: .. .: : :. :.. :: ..:.. .:.....: : mKIAA1 P--PTSSWQS-SSGGSQ-----PRLGTSGSTHGLVRSDTAHWNTPCLSGKGSSEL----L 1280 1290 1300 1310 540 550 560 570 mKIAA1 WGP-PNYSSSLWGVPTVEDPHRMGSPAPL---LPGDLLGGGSDSI :: :.::::::: :..:: . .:::.:: ::::::.: : mKIAA1 WGGVPQYSSSLWGPPSAEDARVIGSPTPLNTLLPGDLLSGESI 1320 1330 1340 1350 1360 >>mKIAA0192 ( 1146 res) msp04171 (1146 aa) initn: 536 init1: 203 opt: 233 Z-score: 143.7 bits: 37.5 E(): 0.0073 Smith-Waterman score: 233; 45.000% identity (45.000% ungapped) in 80 aa overlap (5-84:1022-1101) 10 20 30 mKIAA1 AMLSQLPQIPQFQLACQLLLQQQQQQQQLLQNQR : : : : : ::::::: ...:. mKIAA0 TPLSAQGVQAGVRSTSILPEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHIRQQQ 1000 1010 1020 1030 1040 1050 40 50 60 70 80 90 mKIAA1 KISQAVRQQQEQQLARMVSALQQQQQQQQQQQRQPSMKHSPSHPVGPKPHLDNMVPNALN . .: .::::.:: .. . :::::::::::.:: .... . : :.:. mKIAA0 QQQQMLRQQQQQQQQQQQQQQQQQQQQQQQQQQQPHQQQQQAAPPQPQPQSQPQFQRQGL 1060 1070 1080 1090 1100 1110 100 110 120 130 140 150 mKIAA1 VGLPDLPTKGPIPGYGSGFSSGGMDYGMVGGKEAGTESRFKQWTSMMEGLPSVATQEATM mKIAA0 QQTQQQQQTAALVRQLQQQLSNTQPQPSTNIFGRY 1120 1130 1140 571 residues in 1 query sequences 1768446 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:35:56 2006 done: Mon Mar 27 10:35:57 2006 Scan time: 0.760 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]