FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1500.ptfa, 1728 aa
 vs ./tmplib.26680 library

1767289 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.6136+/-0.00419; mu= 19.2584+/- 0.281
 mean_var=81.7745+/-18.688, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1418

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 41, opt: 29, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1087  ( 723 res)   mbg10728                   ( 723)  184   49 6.4e-06


>>mKIAA1087  ( 723 res)   mbg10728                        (723 aa)
 initn: 166 init1:  96 opt: 184  Z-score: 198.6  bits: 48.6 E(): 6.4e-06
Smith-Waterman score: 216;  26.642% identity (30.932% ungapped) in 274 aa overlap (273-528:196-449)

            250       260       270       280       290        300 
mKIAA1 KIQKVMDSFQFLVKDSKPNVVSDNVFHIQWSLISFKYTSYNVSEKAGSVSVTVQ-RTGNL
                                     : : :. . :.  :. ::: ..:  . :. 
mKIAA1 AGNVLRRHAADAARRPGATDGAPDDEDDGASRIFFEPSLYHCLENCGSVLLSVACQGGEG
         170       180       190       200       210       220     

             310       320       330       340       350       360 
mKIAA1 NQYAIVLCRTEQGTASSSSHPGQQDYMEYAGQVQFDEGESTKSCTVIINDDDVFENIESF
       :.   :  :::.:.:...:     ::    : . :  ::. :.  . : :::.::. : :
mKIAA1 NSTFYVDYRTEDGSAKAGS-----DYEYSEGTLVFKPGETQKDLRIGIIDDDIFEEDEHF
         230       240            250       260       270       280

                              370       380       390       400    
mKIAA1 TV-----------------GLSMPAYALLGEFTQAKVIINDTEDEPTLEFDKKTYRVNES
        :                 : . :   :.. .  : : : : .    . :. .  .:.: 
mKIAA1 FVRLLNLRVGDAQGMFEPDGGGRPKGRLVAPLL-ATVTILDDDHAGIFSFQDRLLHVSEC
              290       300       310        320       330         

          410       420       430       440       450       460    
mKIAA1 AGFLFAPIKRQGDSSSTVSAVCYTVPKSAMGSSLYALESGSDFKSRGRSAESRVIFGPGV
        : . . . :.. . .::     ::  .: :....  .. ....           ::   
mKIAA1 MGTVDVRVVRSSGARGTVRLPYRTVDGTARGGGVHYEDACGELE-----------FGDDE
     340       350       360       370       380                   

          470       480       490       500       510       520    
mKIAA1 TVSTCDVMVIDDSEYEEEEEFEIALADASNNARIGRQAVAKVLISGPNDASTVSLGNTAF
       :..: .: ..:: :::....: : :.. .    . :   : .: .: .: . ..  . : 
mKIAA1 TMKTLQVKIVDDEEYEKKDNFFIELGQPQ---WLKRGISALLLNQGNGDKKITAEQEEAQ
      390       400       410          420       430       440     

          530       540       550       560       570       580    
mKIAA1 TISEDAGTVKIPVIRHGTDLSTFTSVWCATRPSDPASATPGVDYVPSSRKVEFGPGITEQ
        :.:                                                        
mKIAA1 RIAEMGKPVLGENNRLEVIIEESYDFKNTVDKLIKKTNLALVIGTHSWREQFIEAVTVSA
         450       460       470       480       490       500     




1728 residues in 1 query   sequences
1767289 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:46:42 2006 done: Mon Mar 27 10:46:43 2006
 Scan time:  1.330 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]